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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1354 1355 1356 1357 1358 1359 1360 1361 1362 ... 1720 1721 » 67851-67900 / 86044 show all
hfeng-pmm2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	100.0000	100.0000	100.0000	94.1176	15	0	15	0	0
hfeng-pmm2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.8615	99.7820	99.9410	72.3104	16938	37	16938	10	6	60.0000
hfeng-pmm2	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	98.8596	98.1676	99.5615	75.0651	14304	267	14304	63	7	11.1111
hfeng-pmm2	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.2678	97.2079	99.3509	74.1300	8878	255	8878	58	4	6.8966
hfeng-pmm2	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	100.0000	100.0000	100.0000	94.1176	15	0	15	0	0
hfeng-pmm2	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.8432	99.7787	99.9077	76.2675	5411	12	5411	5	3	60.0000
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	96.8694	96.4285	97.3143	66.9705	63017	2334	62795	1733	1467	84.6509
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	97.3816	98.0381	96.7339	73.7893	29882	598	29440	994	753	75.7545
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	94.6842	90.2604	99.5639	40.3949	15078	1627	15298	67	60	89.5522
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	97.8832	99.4000	96.4120	64.9755	18057	109	18057	672	654	97.3214
jlack-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	95.4186	95.3591	95.4783	74.6523	4767	232	4751	225	163	72.4444
jlack-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	93.3647	97.9109	89.2219	85.2038	1781	38	1548	187	133	71.1230
jlack-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	94.8587	90.8856	99.1952	37.8556	1755	176	1972	16	15	93.7500
jlack-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.4013	98.5588	98.2442	73.3744	1231	18	1231	22	15	68.1818
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	97.1875	96.2685	98.1242	59.9927	30236	1172	30236	578	510	88.2353
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.1543	98.3354	97.9739	68.1869	13528	229	13491	279	216	77.4194
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	94.6208	90.1948	99.5035	32.1162	8380	911	8417	42	38	90.4762
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.2945	99.6172	97.0064	59.6494	8328	32	8328	257	256	99.6109
jlack-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	95.5302	94.7711	96.3016	56.4893	16747	924	16743	643	577	89.7356
jlack-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	95.6615	97.9986	93.4332	70.5962	5729	117	5677	399	342	85.7143
jlack-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	94.6297	90.2717	99.4297	29.8103	7275	784	7323	42	36	85.7143
jlack-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	97.0821	99.3893	94.8796	55.1755	3743	23	3743	202	199	98.5149
jlack-gatk	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*		0.0000	0.0000	0.0000	0	1	0	0	0
jlack-gatk	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het		0.0000	0.0000	0.0000	0	1	0	0	0
jlack-gatk	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm3	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	99.0431	98.3803	99.7148	74.9713	14335	236	14335	41	7	17.0732
hfeng-pmm3	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.5901	97.6240	99.5756	74.7725	8916	217	8916	38	5	13.1579
hfeng-pmm3	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.7742	100.0000	93.7500	92.7602	15	0	15	1	1	100.0000
hfeng-pmm3	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.8061	99.6496	99.9630	75.1151	5404	19	5404	2	1	50.0000
jlack-gatk	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
jli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	98.0590	97.3516	98.7767	53.3290	17203	468	17199	213	200	93.8967
jli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.2104	98.0157	98.4058	67.0172	5730	116	5679	92	83	90.2174
jli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	97.5549	95.7315	99.4491	28.9744	7715	344	7762	43	41	95.3488
jli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.8687	99.7876	97.9666	56.5178	3758	8	3758	78	76	97.4359
jli-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	95.1323	91.9608	98.5304	80.4728	1407	123	1408	21	9	42.8571
jli-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	93.4337	89.0390	98.2847	83.6374	593	73	573	10	2	20.0000
jli-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.5621	93.6267	99.6875	66.3512	617	42	638	2	2	100.0000
jli-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	95.8637	96.0976	95.6311	88.8829	197	8	197	9	5	55.5556
jli-custom	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*		0.0000	0.0000	0.0000	0	1	0	0	0
jli-custom	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het		0.0000	0.0000	0.0000	0	1	0	0	0
jli-custom	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jli-custom	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0

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