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Explore HG002 comparison results
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EntryTypeSubtypeSubset GenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
67501-67550 / 86044 show all
gduggal-snapplatINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
0.0000
0.0000
0.0000
00000
gduggal-snapplatINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
0.0000
0.0000
0.0000
00000
gduggal-snapplatINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.0000
0.0000
00000
gduggal-snapplatINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
0.0000
0.0000
0.0000
00000
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
73.1099
94.8597
59.4736
81.1920
13822749139659516255
2.6797
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
66.2291
94.8867
50.8665
79.7967
866646788068506164
1.9281
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
13.6364
100.0000
7.3171
82.8308
150151908
4.2105
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
90.3235
94.7999
86.2508
84.2900
5141282514482083
10.1220
gduggal-snapplatINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
0.0000
0.0000
33.3333
95.5224
01120
0.0000
gduggal-snapplatINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
0.0000
0.0000
96.1538
01020
0.0000
gduggal-snapplatINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
100.0000
00000
gduggal-snapplatINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
0.0000
0.0000
100.0000
88.8889
00100
ghariani-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
90.5713
98.5668
83.7756
81.6259
45047655452128756515
5.8817
ghariani-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
87.0232
98.0670
78.2151
83.4802
2815755528299788282
1.0404
ghariani-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.0000
0.0000
015000
ghariani-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
97.2427
99.4993
95.0863
76.1894
168908516913874433
49.5423
ghariani-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
49.4821
41.3725
61.5460
81.3094
633897629393384
97.7099
ghariani-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
69.4883
82.5826
59.9782
80.9276
550116550367359
97.8202
ghariani-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.7587
0.0000
0.0000
5654000
ghariani-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
50.5393
38.0488
75.2381
84.0909
78127792625
96.1538
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
58.9492
55.4636
62.9024
64.8301
174201398817390102569749
95.0566
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
72.2252
97.0052
57.5294
65.0968
133454121337598749432
95.5236
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.5382
0.0000
0.0000
509241000
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
63.0485
48.1459
91.3123
63.3492
402543354015382317
82.9843
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
42.9887
39.8223
46.7021
60.4305
703710634703180247936
98.9033
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
58.4037
95.8604
41.9946
60.0631
5604242563477827720
99.2033
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.3971
0.0000
0.0000
328027000
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
51.7959
37.2013
85.2349
63.2016
140123651397242216
89.2562
ghariani-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
44.8723
35.0206
62.4365
72.5902
22144108221413321288
96.6967
ghariani-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
71.3996
88.8382
59.6839
72.7955
1751220177511991169
97.4979
ghariani-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.6523
0.0000
0.0000
233503000
ghariani-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
62.9334
53.3333
76.7483
71.4713
440385439133119
89.4737
ghariani-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
47.8508
44.9290
51.1791
74.3426
22462753225721532109
97.9563
ghariani-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
60.3322
92.2485
44.8239
74.0840
1678141169320842043
98.0326
ghariani-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.2589
0.0000
0.0000
51926000
ghariani-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
59.8657
45.0761
89.0995
75.7842
5636865646966
95.6522
ghariani-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
92.5410
98.7028
87.1034
79.6250
30739404308324565319
6.9880
ghariani-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
89.7626
98.2992
82.5903
81.8415
1924633319322407356
1.3749
ghariani-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.0000
0.0000
012000
ghariani-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
97.6620
99.4893
95.9007
73.2635
114935911510492263
53.4553
ghariani-varprowlINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
63.8421
54.7304
76.5939
75.6642
87997278877026802299
85.7836
ghariani-varprowlINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
81.6774
94.4237
71.9631
77.4935
6062358607823682066
87.2466
ghariani-varprowlINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.6615
0.0000
0.0000
395857000
ghariani-varprowlINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
79.6846
71.7362
89.6138
68.4553
269810632692312233
74.6795
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
41.7638
36.3625
49.0496
86.4561
58461023159876219484
7.7826
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
31.6043
34.3302
29.2795
88.3797
220442162292553684
1.5173
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
51.4209
36.9403
84.5736
68.1324
217837182182398329
82.6633
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
53.2289
38.9258
84.1491
87.7362
14642297151328571
24.9123
gduggal-snapplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
82.0910
79.0543
85.3704
89.9548
115193052115601981144
7.2691
gduggal-snapplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
78.7301
78.1671
79.3012
91.5881
713919947172187298
5.2350