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Explore HG002 comparison results
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EntryTypeSubtypeSubset GenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
67151-67200 / 86044 show all
ckim-dragenSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.5758
99.3915
99.7609
70.9351
5390335423134
30.7692
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.0533
97.6374
98.4728
67.8136
63807154463576986844
85.5984
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.6351
98.9928
98.2801
74.5158
3017330729714520391
75.1923
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.1399
92.8943
99.6204
36.5756
155181187157466060
100.0000
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.7571
99.7248
97.8080
67.5218
181165018116406393
96.7980
ckim-dragenSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.9719
99.1684
98.7761
70.4653
308842593107338549
12.7273
ckim-dragenSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.6551
99.1981
98.1180
73.7453
194221571955137540
10.6667
ckim-dragenSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.2963
100.0000
92.8571
87.8261
1201311
100.0000
ckim-dragenSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.5178
99.1170
99.9219
62.2385
114501021150998
88.8889
ckim-dragenSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.6331
99.2657
98.0084
78.2327
144641071461629718
6.0606
ckim-dragenSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.8639
99.1992
98.5310
73.4964
453363664567668166
9.6916
ckim-dragenSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.4729
99.1955
97.7608
76.5892
284812312872865853
8.0547
ckim-dragenSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.9697
100.0000
94.1176
90.5556
1501611
100.0000
ckim-dragenSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.5364
99.2047
99.8702
65.5442
16840135169322212
54.5455
ckim-dragenINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
0.0000
0.0000
62.5000
87.0968
01533
100.0000
ckim-dragenINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
0.0000
0.0000
0.0000
01000
ckim-dragenINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.0000
62.5000
87.0968
00533
100.0000
ckim-dragenINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
0.0000
0.0000
0.0000
00000
ckim-dragenINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
0.0000
0.0000
66.6667
86.3636
00211
100.0000
ckim-dragenINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
0.0000
0.0000
0.0000
00000
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.0556
96.6386
97.4762
58.8481
1707759417071442432
97.7376
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.8754
99.0250
98.7263
71.7769
57895757367467
90.5405
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.4252
93.5104
99.5276
29.6399
753652375843636
100.0000
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
95.5913
99.6283
91.8687
63.3516
3752143751332329
99.0964
ckim-dragenINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.6571
96.7320
98.6000
85.4100
14805014792115
71.4286
ckim-dragenINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.8572
96.8468
98.8889
88.9182
6452162372
28.5714
ckim-dragenINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
97.7620
95.9029
99.6947
70.9147
6322765322
100.0000
ckim-dragenINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
96.6667
99.0244
94.4186
90.8276
20322031211
91.6667
ckim-dragenINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.0410
96.8402
99.2720
68.1668
155695081554611494
82.4561
ckim-dragenINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.8861
98.5202
99.2547
76.5663
63259562594729
61.7021
ckim-dragenINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.6618
93.5550
99.9821
38.6326
5516380557311
100.0000
ckim-dragenINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.6864
99.1226
98.2540
71.3658
37283337146664
96.9697
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.1519
97.5866
98.7237
61.6188
3065075830631396367
92.6768
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
99.2085
99.0041
99.4137
68.4982
13620137135658052
65.0000
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.4901
93.6175
99.5447
31.6449
869859387454040
100.0000
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.2063
99.6651
96.7896
65.1548
8332288321276275
99.6377
ckim-dragenINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
0.0000
0.0000
100.0000
66.6667
00100
ckim-dragenINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
0.0000
0.0000
0.0000
00000
ckim-dragenINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.0000
100.0000
66.6667
00100
ckim-dragenINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
0.0000
0.0000
0.0000
00000
ckim-dragenINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.0000
66.6667
86.3636
00211
100.0000
ckim-dragenINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
0.0000
0.0000
0.0000
00000
ckim-dragenINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
96.3866
96.7594
96.0167
76.6953
48371624821200138
69.0000
ckim-dragenINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
96.5003
98.6256
94.4647
86.9451
17942515539138
41.7582
ckim-dragenINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.2055
93.3713
99.2172
39.1486
180312820281616
100.0000
ckim-dragenINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
96.0496
99.2794
93.0233
76.1666
1240912409384
90.3226
cchapple-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.3852
95.7925
99.0319
61.6504
605626663426253
85.4839
cchapple-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.6696
96.0426
99.3526
60.4030
18937855253628
77.7778
cchapple-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
94.7533
0.0000
0.0000
3341185000
cchapple-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.2572
99.6364
96.9158
68.2486
82238172625
96.1538