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Explore HG002 comparison results
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EntryTypeSubtypeSubset GenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
66951-67000 / 86044 show all
gduggal-bwaplatINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
79.5052
66.5627
98.6958
53.7549
2347117923463128
90.3226
gduggal-bwaplatINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
67.4944
52.3636
94.9227
82.7953
4323934302318
78.2609
gduggal-bwaplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
87.4697
78.9719
98.0167
90.7130
1150730641151523349
21.0300
gduggal-bwaplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
86.7364
78.3970
97.0612
92.7953
71601973716721734
15.6682
gduggal-bwaplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
92.8571
86.6667
100.0000
96.9838
1321300
gduggal-bwaplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
88.6934
79.9189
99.6323
81.5479
4334108943351615
93.7500
gduggal-bwavardINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
0.0000
0.0000
15.9091
95.1300
0014748
10.8108
gduggal-bwavardINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
0.0000
0.0000
13.1579
95.1929
0010666
9.0909
gduggal-bwavardINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.0000
0.0000
00000
gduggal-bwavardINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
0.0000
0.0000
33.3333
94.6903
00482
25.0000
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
59.6850
58.5729
60.8400
68.6799
3827827073381542455822520
91.7013
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
68.5442
93.9928
53.9399
70.1347
286491831286682448022479
91.8260
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.3711
0.0000
0.0000
6216643000
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
68.7985
52.6643
99.1844
57.0543
9567859994867841
52.5641
gduggal-bwaplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
92.4986
87.0629
98.6582
85.3332
27114402927131369118
31.9783
gduggal-bwaplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
92.0166
86.7307
97.9886
88.3681
16981259817002349101
28.9398
gduggal-bwaplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
95.6522
91.6667
100.0000
95.9854
1111100
gduggal-bwaplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
93.3161
87.6212
99.8027
73.3610
101221430101182017
85.0000
gduggal-bwaplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
73.9166
60.1605
95.8284
81.8541
967264059671421148
35.1544
gduggal-bwaplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
68.0328
54.2991
91.0658
88.7322
34862934348634280
23.3918
gduggal-bwaplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
80.8933
68.5041
98.7531
57.3514
4039185740395149
96.0784
gduggal-bwaplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
72.3381
57.0859
98.7121
81.9630
2147161421462819
67.8571
gduggal-bwaplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
90.9395
84.4821
98.4657
87.4931
38610709238635602167
27.7409
gduggal-bwaplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
90.3847
84.0798
97.7117
90.1711
24141457124169566135
23.8516
gduggal-bwaplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
92.8571
86.6667
100.0000
96.9838
1321300
gduggal-bwaplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
91.8804
85.1605
99.7515
76.4930
144562519144533632
88.8889
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
76.0331
67.0590
87.7802
43.4475
1185058211268617661744
98.7542
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
74.4244
62.1108
92.8275
37.1477
363122158943691673
97.3951
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
74.5911
64.9460
87.6005
39.3454
52342825763108107
99.0741
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
77.3354
79.2618
75.5004
55.1018
29857812980967964
99.6898
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
79.0227
95.1074
67.5916
78.7307
4346622364399421094684
3.2426
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
72.8692
95.0543
59.0803
78.2168
2729214202778919247483
2.5095
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
13.6364
100.0000
7.3171
82.8308
150151908
4.2105
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
92.9003
95.1929
90.7155
79.9240
16159816161901657193
11.6476
gduggal-snapfbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
62.0536
50.9807
79.2711
51.4534
322330992436637614
96.3893
gduggal-snapfbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
62.8725
52.4099
78.5542
50.1920
10339381630445427
95.9551
gduggal-snapfbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
63.4640
52.6659
79.8319
50.6633
18571669475120116
96.6667
gduggal-snapfbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
54.1272
40.3636
82.1340
57.9332
3334923317271
98.6111
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
86.7363
86.3984
87.0769
60.8804
2713642722809141691922
46.1022
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
87.6713
88.1806
87.1679
60.5788
121311626177502613591
22.6177
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
83.9960
76.5257
93.0825
45.8976
711021812449182112
61.5385
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
89.5657
94.4378
85.1716
64.2887
7895465789213741219
88.7191
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
77.3318
82.5652
72.7223
71.1326
1327428031203745151002
22.1927
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
74.4014
87.0872
64.9416
71.9724
559182966133570542
15.1821
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
79.7260
75.6106
84.3152
58.0080
445814382204410248
60.4878
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
85.7504
85.7485
85.7523
74.5958
32255363220535212
39.6262
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
81.9557
95.2253
71.9321
77.0498
2965614873004111722436
3.7195
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
76.4238
95.1325
63.8642
77.1773
186269531898310741319
2.9699
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
14.2857
100.0000
7.6923
80.7169
120121447
4.8611
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
94.1513
95.3774
92.9563
76.6652
1101853411046837110
13.1422