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Explore HG002 comparison results
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EntryTypeSubtypeSubset GenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
66901-66950 / 86044 show all
gduggal-snapfbINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
0.0800
0.0400
100.0000
0.0000
24997100
gduggal-snapfbINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
0.1099
0.0550
100.0000
0.0000
11818100
gduggal-snapfbINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.0518
0.0000
0.0000
11930000
gduggal-snapfbINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
0.0000
0.0000
0.0000
01249000
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
77.3261
72.6018
82.7081
62.1191
474461790552604109985193
47.2177
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
77.7734
73.4547
82.6317
60.7271
2238980913494073442239
30.4875
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
71.6758
63.5678
82.1546
59.3969
1061960863241704487
69.1761
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
81.2103
79.4781
83.0196
65.6096
1443837281442329502467
83.6271
gduggal-bwavardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
93.5454
91.9051
95.2453
77.4805
286222521284251419235
16.5610
gduggal-bwavardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
92.2695
91.8075
92.7362
81.6429
179751604178481398224
16.0229
gduggal-bwavardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.0000
0.0000
012000
gduggal-bwavardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
95.8320
92.1659
99.8018
61.7166
10647905105772111
52.3810
gduggal-bwavardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
92.9844
91.6684
94.3387
81.8623
13357121413181791134
16.9406
gduggal-bwavardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
91.6710
91.9194
91.4238
85.3408
83957388283777129
16.6023
gduggal-bwavardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.0000
0.0000
015000
gduggal-bwavardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
95.4306
91.4992
99.7150
67.7457
49624614898145
35.7143
gduggal-bwavardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
50.3306
47.8296
53.1077
74.2686
23912608240121201904
89.8113
gduggal-bwavardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
60.0589
91.9736
44.5872
75.8345
1673146170121141899
89.8297
gduggal-bwavardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.3107
0.0000
0.0000
61925000
gduggal-bwavardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
72.3907
57.0056
99.1501
60.4038
71253770065
83.3333
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
59.9738
55.8902
64.7011
63.2619
17554138541735894708822
93.1573
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
71.9133
95.0643
57.8299
64.8667
130786791296294528806
93.1655
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.2798
0.0000
0.0000
269265000
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
69.3783
53.2297
99.5922
52.1673
4450391043961816
88.8889
gduggal-bwavardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
61.8858
52.4538
75.4536
73.3552
84337644831827062382
88.0266
gduggal-bwavardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
79.0557
93.1620
68.6595
75.7645
5981439592627052382
88.0591
gduggal-bwavardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.4579
0.0000
0.0000
275869000
gduggal-bwavardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
78.3900
64.4775
99.9582
58.4621
24251336239210
0.0000
gduggal-bwavardINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
0.0000
0.0000
50.0000
96.3237
00626217
27.4194
gduggal-bwavardINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
0.0000
0.0000
41.9048
96.6074
00446116
26.2295
gduggal-bwavardINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.0000
0.0000
00000
gduggal-bwavardINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
0.0000
0.0000
94.7368
93.1655
001811
100.0000
gduggal-bwavardINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
40.5868
37.3203
44.4800
81.8709
571959556694384
55.3314
gduggal-bwavardINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
55.3143
76.7267
43.2455
81.7971
511155509668383
57.3353
gduggal-bwavardINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
1.0622
0.0000
0.0000
7652000
gduggal-bwavardINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
36.8928
25.8537
64.3836
82.9837
5315247261
3.8462
gduggal-bwavardINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
0.0000
0.0000
45.6233
95.4980
0117220516
7.8049
gduggal-bwavardINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
0.0000
0.0000
41.7614
95.5004
0114720516
7.8049
gduggal-bwavardINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.0000
0.0000
00000
gduggal-bwavardINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
0.0000
0.0000
100.0000
95.4628
002500
gduggal-bwavardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
42.0732
33.1541
57.5573
69.3357
20964226208315361445
94.0755
gduggal-bwavardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
66.8599
89.2948
53.4347
70.0637
1760211175815321441
94.0601
gduggal-bwavardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.3403
0.0000
0.0000
123514000
gduggal-bwavardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
56.2018
39.2727
98.7842
59.4828
32450132544
100.0000
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
44.4394
41.1352
48.3208
59.7393
726910402722377257546
97.6828
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
58.7698
96.5789
42.2354
60.5712
5646200563877117534
97.7046
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.2482
0.0000
0.0000
208039000
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
59.5561
42.5651
99.1245
51.1308
1603216315851412
85.7143
gduggal-bwaplatINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
72.7559
58.4625
96.3002
76.5890
36962626369614255
38.7324
gduggal-bwaplatINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
61.6323
46.5246
91.2698
88.3076
9171054920889
10.2273