PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6551-6600 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | * | map_siren | hetalt | 0.0000 | 0.8097 | 0.0000 | 0.0000 | 2 | 245 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | map_siren | homalt | 95.6313 | 91.9397 | 99.6318 | 70.4973 | 2441 | 214 | 2435 | 9 | 6 | 66.6667 | |
| gduggal-bwavard | INDEL | C16_PLUS | map_siren | * | 0.0000 | 0.0000 | 25.0000 | 98.3193 | 0 | 0 | 1 | 3 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | map_siren | het | 0.0000 | 0.0000 | 25.0000 | 98.0769 | 0 | 0 | 1 | 3 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C16_PLUS | map_siren | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | * | map_siren | * | 90.0933 | 82.3317 | 99.4705 | 71.0074 | 120392 | 25836 | 120427 | 641 | 167 | 26.0530 | |
| gduggal-bwaplat | SNP | * | map_siren | het | 92.3406 | 86.3635 | 99.2066 | 74.9301 | 78583 | 12408 | 78653 | 629 | 157 | 24.9603 | |
| gduggal-bwaplat | SNP | * | map_siren | hetalt | 78.5185 | 65.4321 | 98.1481 | 84.8315 | 53 | 28 | 53 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | SNP | * | map_siren | homalt | 86.1632 | 75.7053 | 99.9736 | 58.6738 | 41756 | 13400 | 41721 | 11 | 9 | 81.8182 | |
| gduggal-bwaplat | INDEL | I16_PLUS | map_siren | * | 46.9565 | 31.3953 | 93.1034 | 90.6149 | 27 | 59 | 27 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | map_siren | het | 44.4444 | 28.5714 | 100.0000 | 92.6702 | 14 | 35 | 14 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_siren | hetalt | 40.0000 | 25.0000 | 100.0000 | 91.6667 | 4 | 12 | 4 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_siren | homalt | 56.2500 | 42.8571 | 81.8182 | 84.2857 | 9 | 12 | 9 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | map_siren | * | 79.0667 | 66.2295 | 98.0769 | 90.4236 | 202 | 103 | 204 | 4 | 4 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | map_siren | het | 77.4539 | 63.6364 | 98.9362 | 93.0060 | 91 | 52 | 93 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | map_siren | hetalt | 75.8621 | 61.1111 | 100.0000 | 87.2093 | 44 | 28 | 44 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_siren | homalt | 83.7500 | 74.4444 | 95.7143 | 85.5372 | 67 | 23 | 67 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | SNP | * | map_siren | * | 98.7590 | 99.8051 | 97.7347 | 59.1101 | 145943 | 285 | 141168 | 3272 | 81 | 2.4756 | |
| eyeh-varpipe | SNP | * | map_siren | het | 98.0835 | 99.7637 | 96.4589 | 61.2396 | 90776 | 215 | 87713 | 3220 | 51 | 1.5839 | |
| eyeh-varpipe | SNP | * | map_siren | hetalt | 98.9320 | 98.7654 | 99.0991 | 70.0162 | 80 | 1 | 550 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | SNP | * | map_siren | homalt | 99.8931 | 99.8749 | 99.9112 | 54.6593 | 55087 | 69 | 52905 | 47 | 25 | 53.1915 | |
| eyeh-varpipe | SNP | ti | map_siren | * | 99.4355 | 99.7967 | 99.0768 | 57.9702 | 100151 | 204 | 97874 | 912 | 55 | 6.0307 | |
| eyeh-varpipe | SNP | ti | map_siren | het | 99.1597 | 99.7515 | 98.5748 | 60.2517 | 62227 | 155 | 60657 | 877 | 34 | 3.8769 | |
| eyeh-varpipe | SNP | ti | map_siren | hetalt | 98.7189 | 98.2456 | 99.1968 | 68.8944 | 56 | 1 | 494 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | SNP | ti | map_siren | homalt | 99.8945 | 99.8734 | 99.9157 | 53.2558 | 37868 | 48 | 36723 | 31 | 17 | 54.8387 | |
| gduggal-bwafb | INDEL | C16_PLUS | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C1_5 | map_siren | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C1_5 | map_siren | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C1_5 | map_siren | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C1_5 | map_siren | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | map_siren | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | map_siren | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | map_siren | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | map_siren | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | * | map_siren | * | 96.8227 | 95.3306 | 98.3622 | 80.8381 | 7064 | 346 | 7147 | 119 | 50 | 42.0168 | |
| gduggal-bwafb | INDEL | * | map_siren | het | 96.6142 | 94.9645 | 98.3223 | 79.9104 | 4281 | 227 | 4454 | 76 | 20 | 26.3158 | |
| gduggal-bwafb | INDEL | * | map_siren | hetalt | 81.9967 | 71.2551 | 96.5517 | 92.6020 | 176 | 71 | 84 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_siren | homalt | 98.3408 | 98.1921 | 98.4900 | 81.3372 | 2607 | 48 | 2609 | 40 | 27 | 67.5000 | |
| eyeh-varpipe | INDEL | I6_15 | map_siren | * | 77.9593 | 69.5082 | 88.7500 | 73.3555 | 212 | 93 | 284 | 36 | 33 | 91.6667 | |
| eyeh-varpipe | INDEL | I6_15 | map_siren | het | 82.9333 | 77.6224 | 89.0244 | 72.7121 | 111 | 32 | 146 | 18 | 16 | 88.8889 | |
| eyeh-varpipe | INDEL | I6_15 | map_siren | hetalt | 46.8085 | 30.5556 | 100.0000 | 73.7226 | 22 | 50 | 36 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_siren | homalt | 86.3666 | 87.7778 | 85.0000 | 74.0821 | 79 | 11 | 102 | 18 | 17 | 94.4444 | |
| eyeh-varpipe | SNP | tv | map_siren | * | 97.2803 | 99.8215 | 94.8652 | 61.8425 | 45848 | 82 | 45301 | 2452 | 30 | 1.2235 | |
| eyeh-varpipe | SNP | tv | map_siren | het | 95.7583 | 99.7903 | 92.0396 | 63.5402 | 28549 | 60 | 28096 | 2430 | 18 | 0.7407 | |
| eyeh-varpipe | SNP | tv | map_siren | hetalt | 98.7001 | 98.7654 | 98.6348 | 72.7948 | 80 | 1 | 289 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | SNP | tv | map_siren | homalt | 99.8859 | 99.8782 | 99.8937 | 58.0270 | 17219 | 21 | 16916 | 18 | 8 | 44.4444 | |