PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6501-6550 / 86044 show all | |||||||||||||||
| gduggal-bwavard | SNP | tv | map_siren | * | 96.6959 | 97.4309 | 95.9719 | 67.9885 | 44750 | 1180 | 44530 | 1869 | 157 | 8.4002 | |
| gduggal-bwavard | SNP | tv | map_siren | het | 95.7305 | 97.7804 | 93.7647 | 72.5806 | 27974 | 635 | 27865 | 1853 | 145 | 7.8252 | |
| gduggal-bwavard | SNP | tv | map_siren | hetalt | 0.0000 | 1.2346 | 0.0000 | 0.0000 | 1 | 80 | 0 | 0 | 0 | ||
| gduggal-bwavard | SNP | tv | map_siren | homalt | 98.5863 | 97.3028 | 99.9041 | 54.3761 | 16775 | 465 | 16665 | 16 | 12 | 75.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_siren | * | 96.5488 | 96.9963 | 96.1054 | 82.0770 | 3423 | 106 | 3430 | 139 | 27 | 19.4245 | |
| gduggal-snapfb | INDEL | D1_5 | map_siren | het | 96.3818 | 97.5406 | 95.2502 | 79.8220 | 2221 | 56 | 2246 | 112 | 13 | 11.6071 | |
| gduggal-snapfb | INDEL | D1_5 | map_siren | hetalt | 75.7129 | 65.4762 | 89.7436 | 93.8583 | 55 | 29 | 35 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_siren | homalt | 98.1197 | 98.2021 | 98.0375 | 84.5627 | 1147 | 21 | 1149 | 23 | 11 | 47.8261 | |
| gduggal-snapfb | INDEL | I6_15 | map_siren | * | 79.8374 | 72.4590 | 88.8889 | 71.7489 | 221 | 84 | 224 | 28 | 26 | 92.8571 | |
| gduggal-snapfb | INDEL | I6_15 | map_siren | het | 82.4328 | 77.6224 | 87.8788 | 67.1968 | 111 | 32 | 145 | 20 | 18 | 90.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_siren | hetalt | 66.0377 | 62.5000 | 70.0000 | 76.1905 | 45 | 27 | 14 | 6 | 6 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_siren | homalt | 82.8025 | 72.2222 | 97.0149 | 78.0328 | 65 | 25 | 65 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | SNP | * | map_siren | * | 98.4685 | 98.6644 | 98.2733 | 60.5270 | 144275 | 1953 | 144278 | 2535 | 801 | 31.5976 | |
| gduggal-snapfb | SNP | * | map_siren | het | 98.1134 | 98.8438 | 97.3936 | 60.3479 | 89939 | 1052 | 89942 | 2407 | 760 | 31.5746 | |
| gduggal-snapfb | SNP | * | map_siren | hetalt | 96.3415 | 97.5309 | 95.1807 | 83.3333 | 79 | 2 | 79 | 4 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | * | map_siren | homalt | 99.0661 | 98.3701 | 99.7720 | 60.7462 | 54257 | 899 | 54257 | 124 | 41 | 33.0645 | |
| gduggal-snapfb | SNP | ti | map_siren | * | 98.5881 | 98.6618 | 98.5145 | 58.3905 | 99012 | 1343 | 99014 | 1493 | 523 | 35.0301 | |
| gduggal-snapfb | SNP | ti | map_siren | het | 98.2591 | 98.8009 | 97.7232 | 58.6413 | 61634 | 748 | 61636 | 1436 | 494 | 34.4011 | |
| gduggal-snapfb | SNP | ti | map_siren | hetalt | 96.5517 | 98.2456 | 94.9153 | 82.4405 | 56 | 1 | 56 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_siren | homalt | 99.1394 | 98.4334 | 99.8555 | 57.8682 | 37322 | 594 | 37322 | 54 | 29 | 53.7037 | |
| gduggal-snapfb | INDEL | I16_PLUS | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 86 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 49 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 16 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 21 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I1_5 | map_siren | * | 95.6890 | 96.4725 | 94.9180 | 82.9590 | 2899 | 106 | 2895 | 155 | 39 | 25.1613 | |
| gduggal-snapfb | INDEL | I1_5 | map_siren | het | 94.9188 | 96.2522 | 93.6219 | 81.5720 | 1618 | 63 | 1644 | 112 | 17 | 15.1786 | |
| gduggal-snapfb | INDEL | I1_5 | map_siren | hetalt | 78.6144 | 75.8929 | 81.5385 | 92.3439 | 85 | 27 | 53 | 12 | 9 | 75.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_siren | homalt | 98.0751 | 98.6799 | 97.4776 | 83.6569 | 1196 | 16 | 1198 | 31 | 13 | 41.9355 | |
| gduggal-snapfb | INDEL | D16_PLUS | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 143 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 78 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 31 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 34 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D6_15 | map_siren | * | 82.8291 | 73.2809 | 95.2381 | 76.5845 | 373 | 136 | 380 | 19 | 17 | 89.4737 | |
| gduggal-snapfb | INDEL | D6_15 | map_siren | het | 84.5335 | 75.3571 | 96.2547 | 69.0972 | 211 | 69 | 257 | 10 | 9 | 90.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_siren | hetalt | 64.3533 | 51.5152 | 85.7143 | 76.2712 | 51 | 48 | 12 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_siren | homalt | 89.5161 | 85.3846 | 94.0678 | 84.8912 | 111 | 19 | 111 | 7 | 6 | 85.7143 | |
| gduggal-bwaplat | INDEL | I1_5 | map_siren | * | 85.1433 | 74.4759 | 99.3775 | 89.0629 | 2238 | 767 | 2235 | 14 | 8 | 57.1429 | |
| gduggal-bwaplat | INDEL | I1_5 | map_siren | het | 88.1317 | 79.2980 | 99.1803 | 89.9363 | 1333 | 348 | 1331 | 11 | 5 | 45.4545 | |
| gduggal-bwaplat | INDEL | I1_5 | map_siren | hetalt | 74.1573 | 58.9286 | 100.0000 | 95.6405 | 66 | 46 | 65 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_siren | homalt | 81.6943 | 69.2244 | 99.6437 | 85.3233 | 839 | 373 | 839 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | map_siren | * | 90.8656 | 83.6301 | 99.4716 | 68.7099 | 83927 | 16428 | 83958 | 446 | 118 | 26.4574 | |
| gduggal-bwaplat | SNP | ti | map_siren | het | 92.8447 | 87.2527 | 99.2026 | 72.7353 | 54430 | 7952 | 54492 | 438 | 111 | 25.3425 | |
| gduggal-bwaplat | SNP | ti | map_siren | hetalt | 79.1667 | 66.6667 | 97.4359 | 82.5893 | 38 | 19 | 38 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | map_siren | homalt | 87.4388 | 77.6954 | 99.9762 | 56.7476 | 29459 | 8457 | 29428 | 7 | 6 | 85.7143 | |
| gduggal-bwaplat | SNP | tv | map_siren | * | 88.3540 | 79.4753 | 99.4660 | 75.2106 | 36503 | 9427 | 36507 | 196 | 50 | 25.5102 | |
| gduggal-bwaplat | SNP | tv | map_siren | het | 91.2244 | 84.4245 | 99.2157 | 78.7828 | 24153 | 4456 | 24161 | 191 | 46 | 24.0838 | |
| gduggal-bwaplat | SNP | tv | map_siren | hetalt | 78.5185 | 65.4321 | 98.1481 | 84.8315 | 53 | 28 | 53 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | SNP | tv | map_siren | homalt | 83.2538 | 71.3283 | 99.9675 | 62.6549 | 12297 | 4943 | 12293 | 4 | 3 | 75.0000 | |
| gduggal-bwavard | INDEL | * | map_siren | * | 91.0727 | 92.5911 | 89.6032 | 84.7790 | 6861 | 549 | 6843 | 794 | 423 | 53.2746 | |
| gduggal-bwavard | INDEL | * | map_siren | het | 90.9729 | 98.0035 | 84.8835 | 87.6032 | 4418 | 90 | 4408 | 785 | 417 | 53.1210 | |