PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6351-6400 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | * | map_siren | hetalt | 96.0386 | 93.1174 | 99.1489 | 87.5133 | 230 | 17 | 233 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | * | map_siren | homalt | 97.0575 | 94.9906 | 99.2163 | 82.1825 | 2522 | 133 | 2532 | 20 | 9 | 45.0000 | |
| anovak-vg | INDEL | C16_PLUS | map_siren | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | C16_PLUS | map_siren | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | C16_PLUS | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | C16_PLUS | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D16_PLUS | map_siren | * | 55.8559 | 43.3566 | 78.4810 | 82.5221 | 62 | 81 | 62 | 17 | 14 | 82.3529 | |
| anovak-vg | INDEL | D16_PLUS | map_siren | het | 65.2174 | 57.6923 | 75.0000 | 77.5439 | 45 | 33 | 48 | 16 | 13 | 81.2500 | |
| anovak-vg | INDEL | D16_PLUS | map_siren | hetalt | 0.0000 | 6.4516 | 0.0000 | 0.0000 | 2 | 29 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | map_siren | homalt | 59.9144 | 44.1176 | 93.3333 | 91.0180 | 15 | 19 | 14 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | map_siren | * | 87.4723 | 88.4103 | 86.5539 | 80.0641 | 3120 | 409 | 3122 | 485 | 188 | 38.7629 | |
| anovak-vg | INDEL | D1_5 | map_siren | het | 86.2774 | 89.9868 | 82.8617 | 80.2332 | 2049 | 228 | 2079 | 430 | 142 | 33.0233 | |
| anovak-vg | INDEL | D1_5 | map_siren | hetalt | 0.0000 | 32.1429 | 0.0000 | 0.0000 | 27 | 57 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_siren | homalt | 92.1020 | 89.3836 | 94.9909 | 79.6667 | 1044 | 124 | 1043 | 55 | 46 | 83.6364 | |
| anovak-vg | INDEL | D6_15 | map_siren | * | 73.2509 | 67.3870 | 80.2326 | 79.8971 | 343 | 166 | 345 | 85 | 60 | 70.5882 | |
| anovak-vg | INDEL | D6_15 | map_siren | het | 77.1497 | 77.5000 | 76.8025 | 78.9021 | 217 | 63 | 245 | 74 | 50 | 67.5676 | |
| anovak-vg | INDEL | D6_15 | map_siren | hetalt | 0.0000 | 25.2525 | 0.0000 | 0.0000 | 25 | 74 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | map_siren | homalt | 83.4332 | 77.6923 | 90.0901 | 82.2967 | 101 | 29 | 100 | 11 | 10 | 90.9091 | |
| anovak-vg | INDEL | C6_15 | map_siren | * | 0.0000 | 0.0000 | 50.0000 | 93.3333 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | C6_15 | map_siren | het | 0.0000 | 0.0000 | 50.0000 | 92.8571 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | C6_15 | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | C6_15 | map_siren | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | * | map_siren | * | 72.9885 | 73.1309 | 72.8467 | 79.6324 | 5419 | 1991 | 5489 | 2046 | 1378 | 67.3509 | |
| anovak-vg | INDEL | * | map_siren | het | 71.2155 | 65.8829 | 77.4874 | 82.2828 | 2970 | 1538 | 3084 | 896 | 298 | 33.2589 | |
| anovak-vg | INDEL | * | map_siren | hetalt | 0.0000 | 27.5304 | 0.0000 | 0.0000 | 68 | 179 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | * | map_siren | homalt | 77.1234 | 89.6798 | 67.6512 | 75.5300 | 2381 | 274 | 2405 | 1150 | 1080 | 93.9130 | |
| anovak-vg | INDEL | C1_5 | map_siren | * | 0.0000 | 0.0000 | 38.4615 | 96.4187 | 0 | 0 | 5 | 8 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | map_siren | het | 0.0000 | 0.0000 | 33.3333 | 95.9322 | 0 | 0 | 4 | 8 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | C1_5 | map_siren | homalt | 0.0000 | 0.0000 | 100.0000 | 98.5294 | 0 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | INDEL | C6_15 | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C6_15 | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C6_15 | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C6_15 | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | D16_PLUS | map_siren | * | 93.3991 | 94.4056 | 92.4138 | 94.9653 | 135 | 8 | 134 | 11 | 2 | 18.1818 | |
| astatham-gatk | INDEL | D16_PLUS | map_siren | het | 91.7899 | 96.1538 | 87.8049 | 95.9883 | 75 | 3 | 72 | 10 | 2 | 20.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_siren | hetalt | 93.1034 | 87.0968 | 100.0000 | 82.7381 | 27 | 4 | 29 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | map_siren | homalt | 97.0588 | 97.0588 | 97.0588 | 94.9102 | 33 | 1 | 33 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_siren | * | 94.2920 | 95.3488 | 93.2584 | 92.7642 | 82 | 4 | 83 | 6 | 1 | 16.6667 | |
| astatham-gatk | INDEL | I16_PLUS | map_siren | het | 93.0693 | 95.9184 | 90.3846 | 91.9255 | 47 | 2 | 47 | 5 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_siren | hetalt | 96.7742 | 93.7500 | 100.0000 | 87.2000 | 15 | 1 | 16 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | map_siren | homalt | 95.2381 | 95.2381 | 95.2381 | 95.4447 | 20 | 1 | 20 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I1_5 | map_siren | * | 97.3853 | 95.4077 | 99.4467 | 81.4805 | 2867 | 138 | 2876 | 16 | 5 | 31.2500 | |
| astatham-gatk | INDEL | I1_5 | map_siren | het | 95.5862 | 92.0880 | 99.3606 | 82.8978 | 1548 | 133 | 1554 | 10 | 1 | 10.0000 | |
| astatham-gatk | INDEL | I1_5 | map_siren | hetalt | 98.6425 | 97.3214 | 100.0000 | 87.1765 | 109 | 3 | 109 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_siren | homalt | 99.6711 | 99.8350 | 99.5078 | 78.3135 | 1210 | 2 | 1213 | 6 | 4 | 66.6667 | |
| astatham-gatk | INDEL | I6_15 | map_siren | * | 95.6376 | 93.4426 | 97.9381 | 85.2956 | 285 | 20 | 285 | 6 | 4 | 66.6667 | |
| astatham-gatk | INDEL | I6_15 | map_siren | het | 93.7729 | 89.5105 | 98.4615 | 87.4396 | 128 | 15 | 128 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | map_siren | hetalt | 97.1429 | 94.4444 | 100.0000 | 78.4810 | 68 | 4 | 68 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_siren | homalt | 97.2678 | 98.8889 | 95.6989 | 85.1911 | 89 | 1 | 89 | 4 | 3 | 75.0000 | |