PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6251-6300 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | I16_PLUS | map_siren | hetalt | 96.7742 | 93.7500 | 100.0000 | 87.0968 | 15 | 1 | 16 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_siren | homalt | 92.6829 | 90.4762 | 95.0000 | 95.0249 | 19 | 2 | 19 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_siren | * | 93.2137 | 88.1864 | 98.8489 | 83.6431 | 2650 | 355 | 2662 | 31 | 7 | 22.5806 | |
| asubramanian-gatk | INDEL | I1_5 | map_siren | het | 89.9163 | 82.9863 | 98.1092 | 85.7556 | 1395 | 286 | 1401 | 27 | 5 | 18.5185 | |
| asubramanian-gatk | INDEL | I1_5 | map_siren | hetalt | 97.2727 | 95.5357 | 99.0741 | 87.9867 | 107 | 5 | 107 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_siren | homalt | 97.1653 | 94.7195 | 99.7407 | 79.1155 | 1148 | 64 | 1154 | 3 | 2 | 66.6667 | |
| bgallagher-sentieon | INDEL | C16_PLUS | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | D1_5 | map_siren | * | 99.2660 | 99.4899 | 99.0431 | 81.6382 | 3511 | 18 | 3519 | 34 | 6 | 17.6471 | |
| bgallagher-sentieon | INDEL | D1_5 | map_siren | het | 99.1706 | 99.6047 | 98.7402 | 81.3769 | 2268 | 9 | 2273 | 29 | 2 | 6.8966 | |
| bgallagher-sentieon | INDEL | D1_5 | map_siren | hetalt | 96.3415 | 94.0476 | 98.7500 | 89.6507 | 79 | 5 | 79 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_siren | homalt | 99.6580 | 99.6575 | 99.6584 | 81.1615 | 1164 | 4 | 1167 | 4 | 4 | 100.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_siren | * | 97.5395 | 97.4460 | 97.6331 | 85.2014 | 496 | 13 | 495 | 12 | 2 | 16.6667 | |
| bgallagher-sentieon | INDEL | D6_15 | map_siren | het | 97.3388 | 98.2143 | 96.4789 | 87.3553 | 275 | 5 | 274 | 10 | 2 | 20.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_siren | hetalt | 96.9072 | 94.9495 | 98.9474 | 74.3243 | 94 | 5 | 94 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_siren | homalt | 98.4496 | 97.6923 | 99.2188 | 84.1975 | 127 | 3 | 127 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_siren | * | 94.8959 | 96.5116 | 93.3333 | 92.5926 | 83 | 3 | 84 | 6 | 1 | 16.6667 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_siren | het | 94.1176 | 97.9592 | 90.5660 | 91.6667 | 48 | 1 | 48 | 5 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_siren | hetalt | 96.7742 | 93.7500 | 100.0000 | 87.0968 | 15 | 1 | 16 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | map_siren | homalt | 95.2381 | 95.2381 | 95.2381 | 95.3846 | 20 | 1 | 20 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_siren | * | 92.1664 | 95.1049 | 89.4040 | 94.5171 | 136 | 7 | 135 | 16 | 2 | 12.5000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_siren | het | 91.8695 | 97.4359 | 86.9048 | 95.6967 | 76 | 2 | 73 | 11 | 2 | 18.1818 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_siren | hetalt | 93.1034 | 87.0968 | 100.0000 | 82.6347 | 27 | 4 | 29 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | map_siren | homalt | 91.6667 | 97.0588 | 86.8421 | 94.0157 | 33 | 1 | 33 | 5 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | * | map_siren | * | 98.9031 | 99.0553 | 98.7513 | 82.8003 | 7340 | 70 | 7355 | 93 | 21 | 22.5806 | |
| bgallagher-sentieon | INDEL | * | map_siren | het | 98.7628 | 99.0683 | 98.4592 | 83.3559 | 4466 | 42 | 4473 | 70 | 8 | 11.4286 | |
| bgallagher-sentieon | INDEL | * | map_siren | hetalt | 96.4527 | 93.5223 | 99.5726 | 86.1210 | 231 | 16 | 233 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | * | map_siren | homalt | 99.3618 | 99.5480 | 99.1763 | 81.3504 | 2643 | 12 | 2649 | 22 | 13 | 59.0909 | |
| bgallagher-sentieon | INDEL | C1_5 | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C1_5 | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C1_5 | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C1_5 | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C6_15 | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C6_15 | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C6_15 | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C6_15 | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | I6_15 | map_siren | * | 96.6887 | 95.7377 | 97.6589 | 84.7837 | 292 | 13 | 292 | 7 | 5 | 71.4286 | |
| bgallagher-sentieon | INDEL | I6_15 | map_siren | het | 96.7972 | 95.1049 | 98.5507 | 86.5103 | 136 | 7 | 136 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_siren | hetalt | 96.4029 | 93.0556 | 100.0000 | 78.1046 | 67 | 5 | 67 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_siren | homalt | 96.7391 | 98.8889 | 94.6809 | 85.2201 | 89 | 1 | 89 | 5 | 4 | 80.0000 | |
| cchapple-custom | INDEL | * | map_siren | * | 97.2258 | 97.5978 | 96.8567 | 81.1585 | 7232 | 178 | 7426 | 241 | 69 | 28.6307 | |
| cchapple-custom | INDEL | * | map_siren | het | 96.6860 | 97.7595 | 95.6358 | 82.3179 | 4407 | 101 | 4821 | 220 | 56 | 25.4545 | |
| cchapple-custom | INDEL | * | map_siren | hetalt | 0.0000 | 88.6640 | 0.0000 | 0.0000 | 219 | 28 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_siren | homalt | 98.6746 | 98.1544 | 99.2003 | 78.4454 | 2606 | 49 | 2605 | 21 | 13 | 61.9048 | |
| cchapple-custom | INDEL | C16_PLUS | map_siren | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | C16_PLUS | map_siren | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | C16_PLUS | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C16_PLUS | map_siren | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||