PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1226 1227 1228 1229 1230 1231 1232 1233 1234 ... 1720 1721 » 61451-61500 / 86044 show all
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	97.2973	94.7368	100.0000	70.6667	18	1	22	0	0
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7238	100.0000	99.4490	62.9592	361	0	361	2	1	50.0000
ckim-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.1501	98.3146	100.0000	81.2834	175	3	175	0	0
ckim-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.5349	99.0741	100.0000	81.1151	107	1	105	0	0
ckim-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	97.0588	94.2857	100.0000	75.5245	33	2	35	0	0
ckim-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	85.1695	35	0	35	0	0
ckim-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.4113	99.1196	99.7048	77.3525	1351	12	1351	4	2	50.0000
ckim-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6764	99.6119	99.7409	78.6563	770	3	770	2	0	0.0000
ckim-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	95.8140	91.9643	100.0000	71.9346	103	9	103	0	0
ckim-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7912	100.0000	99.5833	75.9880	478	0	478	2	2	100.0000
ckim-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.4812	99.4812	99.4812	78.2296	1534	8	1534	8	5	62.5000
ckim-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6757	100.0000	99.3534	78.2160	922	0	922	6	3	50.0000
ckim-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	95.1049	91.8919	98.5507	79.7654	68	6	68	1	1	100.0000
ckim-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7250	99.6337	99.8165	78.0419	544	2	544	1	1	100.0000
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5517	99.4030	99.7009	66.4548	999	6	1000	3	2	66.6667
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.7394	99.6528	99.8261	70.1454	574	2	574	1	1	100.0000
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	95.3442	92.7273	98.1132	61.5942	51	4	52	1	1	100.0000
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8665	100.0000	99.7333	59.5032	374	0	374	1	0	0.0000
ckim-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.0047	98.3051	99.7143	69.9828	348	6	349	1	1	100.0000
ckim-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.4318	98.8701	100.0000	74.3402	175	2	175	0	0
ckim-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	97.5904	95.2941	100.0000	52.8736	81	4	82	0	0
ckim-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.4595	100.0000	98.9247	70.0000	92	0	92	1	1	100.0000
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.7416	99.8545	99.6289	56.0363	6175	9	6175	23	2	8.6957
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6319	99.8474	99.4174	58.2620	3925	6	3925	23	2	8.6957
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	80.0000	1	0	1	0	0
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.9333	99.8668	100.0000	51.4674	2249	3	2249	0	0
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.7261	99.8504	99.6021	49.5356	4005	6	4005	16	2	12.5000
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6078	99.8428	99.3740	52.6140	2540	4	2540	16	2	12.5000
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	50.0000	1	0	1	0	0
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.9317	99.8636	100.0000	43.0793	1464	2	1464	0	0
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.7702	99.8620	99.6786	64.4814	2171	3	2171	7	0	0.0000
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6761	99.8558	99.4971	65.7565	1385	2	1385	7	0	0.0000
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	80.0000	1	0	1	0	0
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.9363	99.8728	100.0000	61.9302	785	1	785	0	0
ckim-isaac	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	91.8999	88.1227	96.0154	66.8254	4511	608	4482	186	78	41.9355
ckim-isaac	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	91.8646	89.3667	94.5063	68.0289	2681	319	2632	153	61	39.8693
ckim-isaac	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	84.5989	77.2532	93.4884	70.0139	180	53	201	14	12	85.7143
ckim-isaac	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	92.8267	87.4867	98.8609	64.0750	1650	236	1649	19	5	26.3158
ckim-isaac	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge