PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6101-6150 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | * | map_siren | * | 96.8350 | 98.5155 | 95.2108 | 84.4494 | 7300 | 110 | 7316 | 368 | 36 | 9.7826 | |
| jlack-gatk | INDEL | * | map_siren | het | 95.6389 | 98.6025 | 92.8482 | 85.9136 | 4445 | 63 | 4453 | 343 | 22 | 6.4140 | |
| jlack-gatk | INDEL | * | map_siren | hetalt | 95.3604 | 91.4980 | 99.5633 | 86.9812 | 226 | 21 | 228 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | map_siren | homalt | 99.0590 | 99.0207 | 99.0974 | 80.4586 | 2629 | 26 | 2635 | 24 | 14 | 58.3333 | |
| jlack-gatk | INDEL | C6_15 | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C6_15 | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C6_15 | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C6_15 | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | D16_PLUS | map_siren | * | 89.0690 | 91.6084 | 86.6667 | 94.5750 | 131 | 12 | 130 | 20 | 3 | 15.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_siren | het | 87.6125 | 93.5897 | 82.3529 | 95.8313 | 73 | 5 | 70 | 15 | 2 | 13.3333 | |
| jlack-gatk | INDEL | D16_PLUS | map_siren | hetalt | 89.7657 | 83.8710 | 96.5517 | 80.4054 | 26 | 5 | 28 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_siren | homalt | 91.4286 | 94.1176 | 88.8889 | 93.7716 | 32 | 2 | 32 | 4 | 1 | 25.0000 | |
| jlack-gatk | INDEL | D1_5 | map_siren | * | 96.8891 | 99.0932 | 94.7810 | 83.4660 | 3497 | 32 | 3505 | 193 | 13 | 6.7358 | |
| jlack-gatk | INDEL | D1_5 | map_siren | het | 95.7195 | 99.4730 | 92.2389 | 84.5589 | 2265 | 12 | 2270 | 191 | 11 | 5.7592 | |
| jlack-gatk | INDEL | D1_5 | map_siren | hetalt | 95.0000 | 90.4762 | 100.0000 | 90.7543 | 76 | 8 | 76 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_siren | homalt | 99.3983 | 98.9726 | 99.8277 | 79.2900 | 1156 | 12 | 1159 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | C1_5 | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C1_5 | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C1_5 | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C1_5 | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | SNP | tv | map_siren | * | 99.7604 | 99.7104 | 99.8104 | 56.7354 | 45797 | 133 | 45789 | 87 | 15 | 17.2414 | |
| hfeng-pmm3 | SNP | tv | map_siren | het | 99.6834 | 99.6155 | 99.7514 | 57.1444 | 28499 | 110 | 28494 | 71 | 7 | 9.8592 | |
| hfeng-pmm3 | SNP | tv | map_siren | hetalt | 99.3789 | 98.7654 | 100.0000 | 75.0779 | 80 | 1 | 80 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | map_siren | homalt | 99.8898 | 99.8724 | 99.9071 | 55.8869 | 17218 | 22 | 17215 | 16 | 8 | 50.0000 | |
| jlack-gatk | INDEL | C16_PLUS | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C16_PLUS | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C16_PLUS | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C16_PLUS | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C1_5 | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C1_5 | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C1_5 | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C1_5 | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | D6_15 | map_siren | * | 97.7160 | 96.6601 | 98.7952 | 83.3612 | 492 | 17 | 492 | 6 | 1 | 16.6667 | |
| hfeng-pmm2 | INDEL | D6_15 | map_siren | het | 98.0322 | 97.8571 | 98.2079 | 85.3850 | 274 | 6 | 274 | 5 | 1 | 20.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | map_siren | hetalt | 96.3351 | 92.9293 | 100.0000 | 76.4706 | 92 | 7 | 92 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_siren | homalt | 98.0545 | 96.9231 | 99.2126 | 81.6739 | 126 | 4 | 126 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_siren | * | 94.8959 | 96.5116 | 93.3333 | 91.9499 | 83 | 3 | 84 | 6 | 1 | 16.6667 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_siren | het | 94.1176 | 97.9592 | 90.5660 | 90.9247 | 48 | 1 | 48 | 5 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_siren | hetalt | 96.7742 | 93.7500 | 100.0000 | 87.9699 | 15 | 1 | 16 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | map_siren | homalt | 95.2381 | 95.2381 | 95.2381 | 94.7631 | 20 | 1 | 20 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_siren | * | 99.2171 | 99.0017 | 99.4335 | 80.3741 | 2975 | 30 | 2984 | 17 | 4 | 23.5294 | |
| hfeng-pmm2 | INDEL | I1_5 | map_siren | het | 98.9267 | 98.5723 | 99.2836 | 81.6659 | 1657 | 24 | 1663 | 12 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_siren | hetalt | 98.6425 | 97.3214 | 100.0000 | 87.5429 | 109 | 3 | 109 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | map_siren | homalt | 99.6707 | 99.7525 | 99.5892 | 76.9508 | 1209 | 3 | 1212 | 5 | 4 | 80.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_siren | * | 91.3733 | 93.0070 | 89.7959 | 93.4812 | 133 | 10 | 132 | 15 | 1 | 6.6667 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_siren | het | 91.1204 | 94.8718 | 87.6543 | 94.8375 | 74 | 4 | 71 | 10 | 1 | 10.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_siren | hetalt | 93.1034 | 87.0968 | 100.0000 | 82.9412 | 27 | 4 | 29 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | map_siren | homalt | 90.1408 | 94.1176 | 86.4865 | 92.8295 | 32 | 2 | 32 | 5 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_siren | * | 99.1528 | 99.3483 | 98.9580 | 80.2591 | 3506 | 23 | 3514 | 37 | 6 | 16.2162 | |
| hfeng-pmm2 | INDEL | D1_5 | map_siren | het | 98.9959 | 99.4291 | 98.5665 | 80.1620 | 2264 | 13 | 2269 | 33 | 2 | 6.0606 | |