PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5851-5900 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | SNP | * | map_siren | hetalt | 98.1818 | 100.0000 | 96.4286 | 79.8561 | 81 | 0 | 81 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_siren | homalt | 99.7831 | 99.6882 | 99.8783 | 53.6066 | 54984 | 172 | 54983 | 67 | 63 | 94.0299 | |
| rpoplin-dv42 | INDEL | I1_5 | map_siren | * | 98.7675 | 98.5691 | 98.9667 | 80.4011 | 2962 | 43 | 2969 | 31 | 18 | 58.0645 | |
| rpoplin-dv42 | INDEL | I1_5 | map_siren | het | 98.4530 | 98.2748 | 98.6318 | 80.8695 | 1652 | 29 | 1658 | 23 | 15 | 65.2174 | |
| rpoplin-dv42 | INDEL | I1_5 | map_siren | hetalt | 95.4545 | 93.7500 | 97.2222 | 89.4325 | 105 | 7 | 105 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_siren | homalt | 99.5047 | 99.4224 | 99.5871 | 77.9738 | 1205 | 7 | 1206 | 5 | 3 | 60.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_siren | * | 93.6968 | 90.1639 | 97.5177 | 81.7829 | 275 | 30 | 275 | 7 | 6 | 85.7143 | |
| rpoplin-dv42 | INDEL | I6_15 | map_siren | het | 92.4188 | 89.5105 | 95.5224 | 83.4568 | 128 | 15 | 128 | 6 | 6 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_siren | hetalt | 91.8519 | 86.1111 | 98.4127 | 77.2563 | 62 | 10 | 62 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_siren | homalt | 97.1429 | 94.4444 | 100.0000 | 81.5618 | 85 | 5 | 85 | 0 | 0 | ||
| rpoplin-dv42 | SNP | ti | map_siren | * | 99.6562 | 99.5227 | 99.7902 | 53.3616 | 99876 | 479 | 99868 | 210 | 138 | 65.7143 | |
| rpoplin-dv42 | SNP | ti | map_siren | het | 99.5664 | 99.3973 | 99.7362 | 53.8516 | 62006 | 376 | 61997 | 164 | 94 | 57.3171 | |
| rpoplin-dv42 | SNP | ti | map_siren | hetalt | 98.2759 | 100.0000 | 96.6102 | 78.7004 | 57 | 0 | 57 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | map_siren | homalt | 99.8060 | 99.7283 | 99.8838 | 52.4445 | 37813 | 103 | 37814 | 44 | 42 | 95.4545 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_siren | * | 91.4854 | 87.2093 | 96.2025 | 77.4929 | 75 | 11 | 76 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_siren | het | 92.6316 | 89.7959 | 95.6522 | 77.1144 | 44 | 5 | 44 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_siren | hetalt | 89.6552 | 81.2500 | 100.0000 | 79.4118 | 13 | 3 | 14 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_siren | homalt | 90.0000 | 85.7143 | 94.7368 | 76.8293 | 18 | 3 | 18 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | C6_15 | map_siren | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | C6_15 | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C6_15 | map_siren | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | C6_15 | map_siren | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | SNP | tv | map_siren | * | 99.5468 | 99.4818 | 99.6119 | 56.8797 | 45692 | 238 | 45686 | 178 | 89 | 50.0000 | |
| rpoplin-dv42 | SNP | tv | map_siren | het | 99.4388 | 99.4093 | 99.4683 | 57.2644 | 28440 | 169 | 28436 | 152 | 65 | 42.7632 | |
| rpoplin-dv42 | SNP | tv | map_siren | hetalt | 98.1818 | 100.0000 | 96.4286 | 79.8561 | 81 | 0 | 81 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_siren | homalt | 99.7328 | 99.5998 | 99.8662 | 55.9755 | 17171 | 69 | 17169 | 23 | 21 | 91.3043 | |
| rpoplin-dv42 | INDEL | D1_5 | map_siren | * | 99.0944 | 99.1782 | 99.0107 | 80.6593 | 3500 | 29 | 3503 | 35 | 15 | 42.8571 | |
| rpoplin-dv42 | INDEL | D1_5 | map_siren | het | 99.0134 | 99.1217 | 98.9054 | 80.0820 | 2257 | 20 | 2259 | 25 | 7 | 28.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_siren | hetalt | 95.7055 | 92.8571 | 98.7342 | 91.2804 | 78 | 6 | 78 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_siren | homalt | 99.4879 | 99.7432 | 99.2340 | 80.1520 | 1165 | 3 | 1166 | 9 | 7 | 77.7778 | |
| qzeng-custom | INDEL | I16_PLUS | map_siren | * | 65.7764 | 70.9302 | 61.3208 | 81.7556 | 61 | 25 | 65 | 41 | 5 | 12.1951 | |
| qzeng-custom | INDEL | I16_PLUS | map_siren | het | 63.1714 | 73.4694 | 55.4054 | 79.7814 | 36 | 13 | 41 | 33 | 4 | 12.1212 | |
| qzeng-custom | INDEL | I16_PLUS | map_siren | hetalt | 76.9231 | 62.5000 | 100.0000 | 84.0909 | 10 | 6 | 7 | 0 | 0 | ||
| qzeng-custom | INDEL | I16_PLUS | map_siren | homalt | 69.6721 | 71.4286 | 68.0000 | 85.3801 | 15 | 6 | 17 | 8 | 1 | 12.5000 | |
| qzeng-custom | SNP | * | map_siren | * | 92.3867 | 86.6004 | 99.0016 | 63.6130 | 126634 | 19594 | 125047 | 1261 | 903 | 71.6098 | |
| qzeng-custom | SNP | * | map_siren | het | 92.1648 | 86.4602 | 98.6753 | 68.8551 | 78671 | 12320 | 77914 | 1046 | 710 | 67.8776 | |
| qzeng-custom | SNP | * | map_siren | hetalt | 86.0912 | 76.5432 | 98.3607 | 83.9474 | 62 | 19 | 60 | 1 | 0 | 0.0000 | |
| qzeng-custom | SNP | * | map_siren | homalt | 92.7642 | 86.8464 | 99.5474 | 49.2732 | 47901 | 7255 | 47073 | 214 | 193 | 90.1869 | |
| qzeng-custom | SNP | ti | map_siren | * | 92.5421 | 86.8188 | 99.0732 | 61.8902 | 87127 | 13228 | 86370 | 808 | 570 | 70.5446 | |
| qzeng-custom | SNP | ti | map_siren | het | 92.2591 | 86.5538 | 98.7696 | 67.2335 | 53994 | 8388 | 53703 | 669 | 449 | 67.1151 | |
| qzeng-custom | SNP | ti | map_siren | hetalt | 86.0000 | 75.4386 | 100.0000 | 84.0467 | 43 | 14 | 41 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_siren | homalt | 93.0187 | 87.2719 | 99.5758 | 47.6263 | 33090 | 4826 | 32626 | 139 | 121 | 87.0504 | |
| qzeng-custom | SNP | tv | map_siren | * | 92.0283 | 86.1093 | 98.8212 | 67.3017 | 39550 | 6380 | 39401 | 470 | 339 | 72.1277 | |
| qzeng-custom | SNP | tv | map_siren | het | 91.9469 | 86.2561 | 98.4416 | 72.2639 | 24677 | 3932 | 24636 | 390 | 264 | 67.6923 | |
| qzeng-custom | SNP | tv | map_siren | hetalt | 86.0912 | 76.5432 | 98.3607 | 83.9474 | 62 | 19 | 60 | 1 | 0 | 0.0000 | |
| qzeng-custom | SNP | tv | map_siren | homalt | 92.1926 | 85.9107 | 99.4656 | 52.8075 | 14811 | 2429 | 14705 | 79 | 75 | 94.9367 | |
| qzeng-custom | INDEL | I6_15 | map_siren | * | 71.0638 | 81.6393 | 62.9139 | 77.5520 | 249 | 56 | 285 | 168 | 8 | 4.7619 | |
| qzeng-custom | INDEL | I6_15 | map_siren | het | 67.1265 | 81.8182 | 56.9079 | 78.8889 | 117 | 26 | 173 | 131 | 7 | 5.3435 | |
| qzeng-custom | INDEL | I6_15 | map_siren | hetalt | 84.8000 | 73.6111 | 100.0000 | 78.3333 | 53 | 19 | 26 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_siren | homalt | 77.8370 | 87.7778 | 69.9187 | 73.1441 | 79 | 11 | 86 | 37 | 1 | 2.7027 | |