PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1172 1173 1174 1175 1176 1177 1178 1179 1180 ... 1720 1721 » 58751-58800 / 86044 show all
raldana-dualsentieon	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
raldana-dualsentieon	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
raldana-dualsentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	91.2102	88.3164	94.3001	47.2057	2434	322	2432	147	146	99.3197
raldana-dualsentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	88.8647	90.8347	86.9783	67.1961	555	56	521	78	77	98.7179
raldana-dualsentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	91.7274	84.7190	100.0000	29.6719	1447	261	1479	0	0
raldana-dualsentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	92.1109	98.8558	86.2275	47.5941	432	5	432	69	69	100.0000
raldana-dualsentieon	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	88.3436	82.7586	94.7368	83.5498	72	15	72	4	2	50.0000
raldana-dualsentieon	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	87.7230	81.4815	95.0000	91.0714	22	5	19	1	0	0.0000
raldana-dualsentieon	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	90.7407	83.0508	100.0000	72.3404	49	10	52	0	0
raldana-dualsentieon	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	40.0000	100.0000	25.0000	92.0000	1	0	1	3	2	66.6667
raldana-dualsentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	90.5586	84.7305	97.2477	63.2687	849	153	848	24	21	87.5000
raldana-dualsentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	92.0548	88.8889	95.4545	78.8462	256	32	231	11	8	72.7273
raldana-dualsentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	89.8955	81.6456	100.0000	37.2822	516	116	540	0	0
raldana-dualsentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	89.5349	93.9024	85.5556	75.6098	77	5	77	13	13	100.0000
raldana-dualsentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	92.7674	88.8428	97.0548	55.8776	2142	269	2142	65	63	96.9231
raldana-dualsentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	93.5030	90.1484	97.1168	71.5703	668	73	640	19	17	89.4737
raldana-dualsentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	91.9665	85.1278	100.0000	30.7314	1099	192	1127	0	0
raldana-dualsentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	93.7500	98.9446	89.0736	60.1703	375	4	375	46	46	100.0000
raldana-dualsentieon	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*		0.0000	0.0000	0.0000	0	0	0	0	0
raldana-dualsentieon	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het		0.0000	0.0000	0.0000	0	0	0	0	0
raldana-dualsentieon	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
raldana-dualsentieon	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ndellapenna-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	74.7342	66.9196	84.6154	62.9705	882	436	924	168	144	85.7143
ndellapenna-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	78.8884	79.2818	78.4990	70.8284	287	75	387	106	100	94.3396
ndellapenna-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	66.2973	49.9283	98.6348	46.2385	348	349	289	4	3	75.0000
ndellapenna-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	87.6250	95.3668	81.0458	57.1429	247	12	248	58	41	70.6897
ndellapenna-hhga	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	72.8176	66.8723	79.9231	50.7780	1843	913	1871	470	429	91.2766
ndellapenna-hhga	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	76.4074	92.9624	64.8574	57.8355	568	43	705	382	375	98.1675
ndellapenna-hhga	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	67.2691	51.0539	98.5788	38.7173	872	836	763	11	9	81.8182
ndellapenna-hhga	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	87.8953	92.2197	83.9583	47.5410	403	34	403	77	45	58.4416
ndellapenna-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	70.1987	60.9195	82.8125	82.7957	53	34	53	11	5	45.4545
ndellapenna-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	75.2475	66.6667	86.3636	89.8148	18	9	19	3	1	33.3333
ndellapenna-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	72.0994	59.3220	91.8919	66.9643	35	24	34	3	2	66.6667
ndellapenna-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt		0.0000	0.0000	88.6364	0	1	0	5	2	40.0000
ndellapenna-hhga	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	77.4344	74.8652	80.1862	50.9245	1805	606	1809	447	421	94.1834
ndellapenna-hhga	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	77.5652	94.8718	65.5987	55.1946	703	38	778	408	397	97.3039
ndellapenna-hhga	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	73.2832	58.3269	98.5549	37.2051	753	538	682	10	8	80.0000
ndellapenna-hhga	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	92.2061	92.0844	92.3280	55.4245	349	30	349	29	16	55.1724
ndellapenna-hhga	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	90.5530	86.6267	94.8521	57.6727	868	134	866	47	35	74.4681
ndellapenna-hhga	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	90.1073	88.5417	91.7293	71.7322	255	33	244	22	12	54.5455
ndellapenna-hhga	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	92.0226	86.5506	98.2332	38.6117	547	85	556	10	9	90.0000
ndellapenna-hhga	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	80.9816	80.4878	81.4815	72.4490	66	16	66	15	14	93.3333
ndellapenna-hhga	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	86.9385	82.2761	92.1610	61.6572	441	95	435	37	30	81.0811
ndellapenna-hhga	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	89.3491	89.2617	89.4366	73.6549	133	16	127	15	9	60.0000
ndellapenna-hhga	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	87.5000	79.0634	97.9522	47.2072	287	76	287	6	6	100.0000
ndellapenna-hhga	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	68.8525	87.5000	56.7568	72.9927	21	3	21	16	15	93.7500
ndellapenna-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	90.2276	87.3057	93.3518	89.1559	337	49	337	24	15	62.5000
ndellapenna-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	89.5915	85.8696	93.6508	89.2994	237	39	236	16	7	43.7500
ndellapenna-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
ndellapenna-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	91.7765	90.9091	92.6606	88.7745	100	10	101	8	8	100.0000

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge