PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5751-5800 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | I16_PLUS | map_siren | hetalt | 74.3243 | 62.5000 | 91.6667 | 84.0000 | 10 | 6 | 11 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_siren | homalt | 73.6842 | 66.6667 | 82.3529 | 88.5135 | 14 | 7 | 14 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I1_5 | map_siren | * | 98.9476 | 98.5691 | 99.3291 | 79.9192 | 2962 | 43 | 2961 | 20 | 6 | 30.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_siren | het | 98.8036 | 98.2748 | 99.3381 | 80.3824 | 1652 | 29 | 1651 | 11 | 1 | 9.0909 | |
| ndellapenna-hhga | INDEL | I1_5 | map_siren | hetalt | 97.7169 | 95.5357 | 100.0000 | 88.6049 | 107 | 5 | 107 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | map_siren | homalt | 99.2574 | 99.2574 | 99.2574 | 77.6960 | 1203 | 9 | 1203 | 9 | 5 | 55.5556 | |
| ndellapenna-hhga | INDEL | I6_15 | map_siren | * | 94.7899 | 92.4590 | 97.2414 | 82.6762 | 282 | 23 | 282 | 8 | 7 | 87.5000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_siren | het | 95.0101 | 93.0070 | 97.1014 | 84.4419 | 133 | 10 | 134 | 4 | 3 | 75.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_siren | hetalt | 91.9492 | 87.5000 | 96.8750 | 79.3548 | 63 | 9 | 62 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_siren | homalt | 96.6292 | 95.5556 | 97.7273 | 81.5514 | 86 | 4 | 86 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | SNP | * | map_siren | * | 99.5283 | 99.1937 | 99.8651 | 53.0102 | 145049 | 1179 | 145051 | 196 | 89 | 45.4082 | |
| ndellapenna-hhga | SNP | * | map_siren | het | 99.3524 | 98.8878 | 99.8214 | 53.1990 | 89979 | 1012 | 89980 | 161 | 58 | 36.0248 | |
| ndellapenna-hhga | SNP | * | map_siren | hetalt | 93.5065 | 88.8889 | 98.6301 | 75.8278 | 72 | 9 | 72 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | * | map_siren | homalt | 99.8258 | 99.7135 | 99.9382 | 52.6378 | 54998 | 158 | 54999 | 34 | 30 | 88.2353 | |
| ndellapenna-hhga | INDEL | D6_15 | map_siren | * | 91.7468 | 91.3556 | 92.1415 | 83.5594 | 465 | 44 | 469 | 40 | 20 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_siren | het | 94.0545 | 97.8571 | 90.5363 | 84.7816 | 274 | 6 | 287 | 30 | 16 | 53.3333 | |
| ndellapenna-hhga | INDEL | D6_15 | map_siren | hetalt | 75.3022 | 64.6465 | 90.1639 | 76.8061 | 64 | 35 | 55 | 6 | 2 | 33.3333 | |
| ndellapenna-hhga | INDEL | D6_15 | map_siren | homalt | 97.3180 | 97.6923 | 96.9466 | 82.5333 | 127 | 3 | 127 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | C6_15 | map_siren | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C6_15 | map_siren | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C6_15 | map_siren | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C6_15 | map_siren | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | D1_5 | map_siren | * | 98.3828 | 98.2715 | 98.4943 | 79.4152 | 3468 | 61 | 3467 | 53 | 28 | 52.8302 | |
| ndellapenna-hhga | INDEL | D1_5 | map_siren | het | 98.4865 | 98.5946 | 98.3786 | 78.7325 | 2245 | 32 | 2245 | 37 | 15 | 40.5405 | |
| ndellapenna-hhga | INDEL | D1_5 | map_siren | hetalt | 82.6305 | 73.8095 | 93.8462 | 91.2399 | 62 | 22 | 61 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_siren | homalt | 99.1884 | 99.4007 | 98.9770 | 79.1578 | 1161 | 7 | 1161 | 12 | 11 | 91.6667 | |
| raldana-dualsentieon | INDEL | C16_PLUS | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | C16_PLUS | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | C16_PLUS | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | C16_PLUS | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | C1_5 | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | D1_5 | map_siren | * | 99.1622 | 98.8665 | 99.4596 | 79.2799 | 3489 | 40 | 3497 | 19 | 5 | 26.3158 | |
| raldana-dualsentieon | INDEL | D1_5 | map_siren | het | 99.0760 | 98.8142 | 99.3392 | 78.2192 | 2250 | 27 | 2255 | 15 | 1 | 6.6667 | |
| raldana-dualsentieon | INDEL | D1_5 | map_siren | hetalt | 96.2963 | 92.8571 | 100.0000 | 89.3151 | 78 | 6 | 78 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_siren | homalt | 99.5289 | 99.4007 | 99.6575 | 79.9209 | 1161 | 7 | 1164 | 4 | 4 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_siren | * | 97.5124 | 96.2672 | 98.7903 | 81.9898 | 490 | 19 | 490 | 6 | 2 | 33.3333 | |
| raldana-dualsentieon | INDEL | D6_15 | map_siren | het | 97.4729 | 96.4286 | 98.5401 | 83.9390 | 270 | 10 | 270 | 4 | 1 | 25.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_siren | hetalt | 95.7895 | 91.9192 | 100.0000 | 72.3404 | 91 | 8 | 91 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_siren | homalt | 98.8506 | 99.2308 | 98.4733 | 81.7803 | 129 | 1 | 129 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_siren | * | 95.9267 | 95.3488 | 96.5116 | 89.3696 | 82 | 4 | 83 | 3 | 1 | 33.3333 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_siren | het | 94.8454 | 93.8776 | 95.8333 | 88.5442 | 46 | 3 | 46 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_siren | hetalt | 96.7742 | 93.7500 | 100.0000 | 84.0000 | 15 | 1 | 16 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_siren | homalt | 97.6744 | 100.0000 | 95.4545 | 92.4138 | 21 | 0 | 21 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_siren | * | 92.6068 | 92.3077 | 92.9078 | 92.7357 | 132 | 11 | 131 | 10 | 2 | 20.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_siren | het | 91.6263 | 93.5897 | 89.7436 | 94.0321 | 73 | 5 | 70 | 8 | 2 | 25.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_siren | hetalt | 91.2281 | 83.8710 | 100.0000 | 80.5556 | 26 | 5 | 28 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | map_siren | homalt | 95.6522 | 97.0588 | 94.2857 | 92.8571 | 33 | 1 | 33 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | * | map_siren | * | 98.6998 | 98.2726 | 99.1307 | 80.1633 | 7282 | 128 | 7298 | 64 | 16 | 25.0000 | |
| raldana-dualsentieon | INDEL | * | map_siren | het | 98.4968 | 98.0479 | 98.9497 | 80.0579 | 4420 | 88 | 4428 | 47 | 5 | 10.6383 | |
| raldana-dualsentieon | INDEL | * | map_siren | hetalt | 95.1168 | 90.6883 | 100.0000 | 85.1022 | 224 | 23 | 226 | 0 | 0 | ||