PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
5651-5700 / 86044 show all | |||||||||||||||
gduggal-snapvard | SNP | * | map_siren | hetalt | 0.0000 | 1.2346 | 0.0000 | 0.0000 | 1 | 80 | 0 | 0 | 0 | ||
gduggal-snapvard | SNP | * | map_siren | homalt | 98.0593 | 96.3449 | 99.8358 | 52.8740 | 53140 | 2016 | 52295 | 86 | 67 | 77.9070 | |
ghariani-varprowl | INDEL | * | map_siren | hetalt | 0.0000 | 0.8097 | 0.0000 | 0.0000 | 2 | 245 | 0 | 0 | 0 | ||
ghariani-varprowl | INDEL | * | map_siren | homalt | 94.2088 | 91.6008 | 96.9697 | 74.6820 | 2432 | 223 | 2432 | 76 | 25 | 32.8947 | |
ghariani-varprowl | INDEL | C16_PLUS | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
ghariani-varprowl | INDEL | C16_PLUS | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
ghariani-varprowl | INDEL | C16_PLUS | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
ghariani-varprowl | INDEL | C16_PLUS | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
ghariani-varprowl | INDEL | C1_5 | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
ghariani-varprowl | INDEL | C1_5 | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
ghariani-varprowl | INDEL | C1_5 | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
ghariani-varprowl | INDEL | C1_5 | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
ghariani-varprowl | INDEL | C6_15 | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
ghariani-varprowl | INDEL | C6_15 | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
ghariani-varprowl | INDEL | C6_15 | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
ghariani-varprowl | INDEL | C6_15 | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
gduggal-snapvard | SNP | tv | map_siren | * | 95.8840 | 96.8735 | 94.9146 | 68.0322 | 44494 | 1436 | 44271 | 2372 | 211 | 8.8955 | |
gduggal-snapvard | SNP | tv | map_siren | het | 94.6657 | 97.2841 | 92.1846 | 72.3745 | 27832 | 777 | 27719 | 2350 | 198 | 8.4255 | |
gduggal-snapvard | SNP | tv | map_siren | hetalt | 0.0000 | 1.2346 | 0.0000 | 0.0000 | 1 | 80 | 0 | 0 | 0 | ||
gduggal-snapvard | SNP | tv | map_siren | homalt | 98.2279 | 96.6415 | 99.8673 | 55.2791 | 16661 | 579 | 16552 | 22 | 13 | 59.0909 | |
ghariani-varprowl | INDEL | * | map_siren | * | 90.8910 | 92.7126 | 89.1397 | 90.4253 | 6870 | 540 | 6870 | 837 | 449 | 53.6440 | |
ghariani-varprowl | INDEL | * | map_siren | het | 91.4200 | 98.4028 | 85.3626 | 87.1990 | 4436 | 72 | 4438 | 761 | 424 | 55.7162 | |
gduggal-snapvard | INDEL | I6_15 | map_siren | * | 59.5493 | 55.7377 | 63.9205 | 78.6148 | 170 | 135 | 225 | 127 | 95 | 74.8031 | |
gduggal-snapvard | INDEL | I6_15 | map_siren | het | 70.4297 | 84.6154 | 60.3175 | 79.3713 | 121 | 22 | 190 | 125 | 93 | 74.4000 | |
gduggal-snapvard | INDEL | I6_15 | map_siren | hetalt | 0.0000 | 29.1667 | 0.0000 | 0.0000 | 21 | 51 | 0 | 0 | 0 | ||
gduggal-snapvard | INDEL | I6_15 | map_siren | homalt | 46.8227 | 31.1111 | 94.5946 | 68.9076 | 28 | 62 | 35 | 2 | 2 | 100.0000 | |
gduggal-snapvard | SNP | ti | map_siren | * | 96.3076 | 96.1556 | 96.4600 | 63.8276 | 96497 | 3858 | 95534 | 3506 | 409 | 11.6657 | |
gduggal-snapvard | SNP | ti | map_siren | het | 95.3627 | 96.2088 | 94.5314 | 68.3335 | 60017 | 2365 | 59499 | 3442 | 355 | 10.3138 | |
gduggal-snapvard | SNP | ti | map_siren | hetalt | 0.0000 | 1.7544 | 0.0000 | 0.0000 | 1 | 56 | 0 | 0 | 0 | ||
gduggal-snapvard | SNP | ti | map_siren | homalt | 97.9831 | 96.2100 | 99.8227 | 51.8924 | 36479 | 1437 | 36035 | 64 | 54 | 84.3750 | |
gduggal-snapplat | INDEL | * | map_siren | * | 79.6077 | 71.8219 | 89.2868 | 89.6136 | 5322 | 2088 | 5709 | 685 | 78 | 11.3869 | |
gduggal-snapplat | INDEL | * | map_siren | het | 79.1743 | 73.0923 | 86.3603 | 90.4763 | 3295 | 1213 | 3552 | 561 | 54 | 9.6257 | |
gduggal-snapplat | INDEL | * | map_siren | hetalt | 28.1292 | 17.4089 | 73.2143 | 97.8495 | 43 | 204 | 41 | 15 | 8 | 53.3333 | |
gduggal-snapplat | INDEL | * | map_siren | homalt | 83.6919 | 74.7269 | 95.1011 | 85.8909 | 1984 | 671 | 2116 | 109 | 16 | 14.6789 | |
gduggal-snapplat | INDEL | C6_15 | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
gduggal-snapplat | INDEL | C6_15 | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
gduggal-snapplat | INDEL | C6_15 | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
gduggal-snapplat | INDEL | C6_15 | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
gduggal-snapplat | INDEL | D16_PLUS | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 143 | 0 | 0 | 0 | |||
gduggal-snapplat | INDEL | D16_PLUS | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 78 | 0 | 0 | 0 | |||
gduggal-snapplat | INDEL | D16_PLUS | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 31 | 0 | 0 | 0 | |||
gduggal-snapplat | INDEL | D16_PLUS | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 34 | 0 | 0 | 0 | |||
gduggal-snapplat | INDEL | D1_5 | map_siren | * | 85.8913 | 80.9294 | 91.5013 | 89.0859 | 2856 | 673 | 3273 | 304 | 56 | 18.4211 | |
gduggal-snapplat | INDEL | D1_5 | map_siren | het | 85.7607 | 82.4769 | 89.3168 | 89.6940 | 1878 | 399 | 2157 | 258 | 42 | 16.2791 | |
gduggal-snapplat | INDEL | D1_5 | map_siren | hetalt | 34.1880 | 23.8095 | 60.6061 | 98.0287 | 20 | 64 | 20 | 13 | 7 | 53.8462 | |
gduggal-snapplat | INDEL | D1_5 | map_siren | homalt | 88.9159 | 82.0205 | 97.0771 | 85.2746 | 958 | 210 | 1096 | 33 | 7 | 21.2121 | |
gduggal-snapplat | INDEL | D6_15 | map_siren | * | 43.1110 | 29.0766 | 83.3333 | 91.7593 | 148 | 361 | 105 | 21 | 3 | 14.2857 | |
gduggal-snapplat | INDEL | D6_15 | map_siren | het | 45.1091 | 32.1429 | 75.6098 | 90.5093 | 90 | 190 | 62 | 20 | 2 | 10.0000 | |
gduggal-snapplat | INDEL | D6_15 | map_siren | hetalt | 21.6216 | 12.1212 | 100.0000 | 96.0265 | 12 | 87 | 12 | 0 | 0 | ||
gduggal-snapplat | INDEL | D6_15 | map_siren | homalt | 51.8357 | 35.3846 | 96.8750 | 91.1846 | 46 | 84 | 31 | 1 | 1 | 100.0000 |