PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1109 1110 1111 1112 1113 1114 1115 1116 1117 ... 1720 1721 » 55601-55650 / 86044 show all
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	55.3485	41.4226	83.3803	72.9627	297	420	296	59	57	96.6102
ghariani-varprowl	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	45.8395	42.0033	50.4468	47.0151	8651	11945	8637	8484	8329	98.1730
ghariani-varprowl	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	62.6517	96.2893	46.4314	47.0193	7110	274	7143	8241	8121	98.5439
ghariani-varprowl	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	0.0000	0.5435	0.0000	0.0000	44	8051	0	0	0
ghariani-varprowl	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	65.6871	92.0525	51.0621	85.0059	1193	103	1226	1175	118	10.0426
ghariani-varprowl	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	59.0564	88.9542	44.2005	85.0316	757	94	785	991	11	1.1100
ghariani-varprowl	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	1	0	0	0
ghariani-varprowl	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	82.1159	98.1982	70.5600	84.9325	436	8	441	184	107	58.1522
ghariani-varprowl	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	34.4349	24.2003	59.6699	64.4061	1672	5237	1663	1124	1036	92.1708
ghariani-varprowl	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	71.3875	89.5226	59.3622	63.3723	1444	169	1452	994	947	95.2716
ghariani-varprowl	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	0.0000	0.3873	0.0000	0.0000	18	4629	0	0	0
ghariani-varprowl	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	42.4936	32.3575	61.8768	70.3993	210	439	211	130	89	68.4615
gduggal-snapplat	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	38.3331	34.4623	43.1834	76.0195	2381	4528	2420	3184	342	10.7412
gduggal-snapplat	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	16.5768	23.8066	12.7153	80.3047	384	1229	406	2787	32	1.1482
gduggal-snapplat	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	53.5399	39.1005	84.8881	55.0336	1817	2830	1820	324	282	87.0370
gduggal-snapplat	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	40.1458	27.7350	72.6592	88.8238	180	469	194	73	28	38.3562
gduggal-snapplat	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	52.6981	52.4613	52.9371	95.3580	746	676	757	673	56	8.3210
gduggal-snapplat	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	45.4362	49.0690	42.3041	95.5909	448	465	459	626	33	5.2716
gduggal-snapplat	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt		0.0000		100.0000	0	2	0	0	0
gduggal-snapplat	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	69.9531	58.7771	86.3768	94.4057	298	209	298	47	23	48.9362
gduggal-snapplat	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	53.9147	55.1698	52.7154	94.4211	715	581	728	653	58	8.8821
gduggal-snapplat	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	48.7545	54.7591	43.9366	94.6836	466	385	471	601	36	5.9900
gduggal-snapplat	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt		0.0000		100.0000	0	1	0	0	0
gduggal-snapplat	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	66.9912	56.0811	83.1715	93.2356	249	195	257	52	22	42.3077
gduggal-snapvard	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*		0.0000	0.0000	89.2857	0	0	0	6	2	33.3333
gduggal-snapvard	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het		0.0000	0.0000	88.4615	0	0	0	6	2	33.3333
gduggal-snapvard	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
gduggal-snapplat	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	43.9656	31.1283	74.8222	59.1398	1087	2405	1052	354	57	16.1017
gduggal-snapplat	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	21.8945	17.7898	28.4615	75.2538	132	610	111	279	3	1.0753
gduggal-snapplat	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	51.6425	35.4076	95.3714	40.1032	899	1640	886	43	33	76.7442
gduggal-snapplat	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	37.3854	26.5403	63.2184	72.2930	56	155	55	32	21	65.6250
gduggal-snapplat	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	53.2962	53.7725	52.8282	94.9386	1461	1256	1485	1326	114	8.5973
gduggal-snapplat	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	47.0662	51.8141	43.1154	95.1823	914	850	930	1227	69	5.6235
gduggal-snapplat	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt		0.0000		100.0000	0	2	0	0	0
gduggal-snapplat	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	68.5647	57.5184	84.8624	93.9078	547	404	555	99	45	45.4545
gduggal-snapvard	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	54.3999	51.2849	57.9178	44.7526	19438	18464	33023	23994	20921	87.1926
gduggal-snapvard	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	65.7662	77.6219	57.0522	44.3331	11346	3271	31729	23885	20828	87.2012
gduggal-snapvard	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	0.0000	50.1162	0.0000	0.0000	6898	6866	0	0	0
gduggal-snapvard	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	22.0793	12.5407	92.2309	57.4591	1194	8327	1294	109	93	85.3211
gduggal-snapplat	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*		0.0000	0.0000	0.0000	0	497	0	0	0
gduggal-snapplat	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het		0.0000	0.0000	0.0000	0	133	0	0	0
gduggal-snapplat	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	341	0	0	0
gduggal-snapplat	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	23	0	0	0
hfeng-pmm1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	96.9107	94.4420	99.5119	50.8251	6525	384	6524	32	25	78.1250
hfeng-pmm1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	97.9808	97.2102	98.7638	71.4047	1568	45	1518	19	12	63.1579
hfeng-pmm1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.3880	93.0278	100.0000	27.8191	4323	324	4372	0	0
hfeng-pmm1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	97.8395	97.6888	97.9907	65.9474	634	15	634	13	13	100.0000
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	93.9208	88.8117	99.6537	86.9255	1151	145	1151	4	0	0.0000
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	90.8046	83.5488	99.4406	88.0415	711	140	711	4	0	0.0000

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge