PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5501-5550 / 86044 show all | |||||||||||||||
| ciseli-custom | SNP | * | map_siren | * | 89.7321 | 87.9989 | 91.5349 | 59.0239 | 128679 | 17549 | 128115 | 11848 | 2967 | 25.0422 | |
| ciseli-custom | SNP | * | map_siren | het | 87.4519 | 84.7172 | 90.3691 | 62.2108 | 77085 | 13906 | 76849 | 8190 | 211 | 2.5763 | |
| ciseli-custom | SNP | * | map_siren | hetalt | 77.2414 | 69.1358 | 87.5000 | 66.4921 | 56 | 25 | 56 | 8 | 7 | 87.5000 | |
| ciseli-custom | SNP | * | map_siren | homalt | 93.3935 | 93.4404 | 93.3467 | 52.8475 | 51538 | 3618 | 51210 | 3650 | 2749 | 75.3151 | |
| ciseli-custom | SNP | ti | map_siren | * | 90.7989 | 89.0429 | 92.6255 | 57.4504 | 89359 | 10996 | 89077 | 7092 | 2003 | 28.2431 | |
| ciseli-custom | SNP | ti | map_siren | het | 88.8574 | 85.8902 | 92.0370 | 60.6835 | 53580 | 8802 | 53468 | 4626 | 118 | 2.5508 | |
| ciseli-custom | SNP | ti | map_siren | hetalt | 81.1321 | 75.4386 | 87.7551 | 63.1579 | 43 | 14 | 43 | 6 | 6 | 100.0000 | |
| ciseli-custom | SNP | ti | map_siren | homalt | 93.8892 | 94.2504 | 93.5307 | 51.3255 | 35736 | 2180 | 35566 | 2460 | 1879 | 76.3821 | |
| ciseli-custom | SNP | tv | map_siren | * | 87.3579 | 85.7022 | 89.0790 | 62.2878 | 39363 | 6567 | 39315 | 4820 | 974 | 20.2075 | |
| ciseli-custom | SNP | tv | map_siren | het | 84.4100 | 82.1595 | 86.7874 | 65.3031 | 23505 | 5104 | 23489 | 3576 | 93 | 2.6007 | |
| ciseli-custom | SNP | tv | map_siren | hetalt | 77.2414 | 69.1358 | 87.5000 | 66.4921 | 56 | 25 | 56 | 8 | 7 | 87.5000 | |
| ciseli-custom | SNP | tv | map_siren | homalt | 92.1923 | 91.6589 | 92.7320 | 56.2107 | 15802 | 1438 | 15770 | 1236 | 874 | 70.7120 | |
| ckim-dragen | INDEL | * | map_siren | * | 97.9669 | 98.2321 | 97.7032 | 83.7470 | 7279 | 131 | 7274 | 171 | 29 | 16.9591 | |
| ckim-dragen | INDEL | * | map_siren | het | 97.4637 | 98.1145 | 96.8216 | 84.6377 | 4423 | 85 | 4417 | 145 | 14 | 9.6552 | |
| ckim-dragen | INDEL | * | map_siren | hetalt | 96.2185 | 92.7126 | 100.0000 | 86.2007 | 229 | 18 | 231 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_siren | homalt | 98.9825 | 98.9454 | 99.0196 | 81.6305 | 2627 | 28 | 2626 | 26 | 15 | 57.6923 | |
| ciseli-custom | INDEL | I6_15 | map_siren | * | 31.6781 | 21.6393 | 59.0909 | 84.5070 | 66 | 239 | 65 | 45 | 41 | 91.1111 | |
| ciseli-custom | INDEL | I6_15 | map_siren | het | 39.1268 | 27.9720 | 65.0794 | 86.1842 | 40 | 103 | 41 | 22 | 21 | 95.4545 | |
| ciseli-custom | INDEL | I6_15 | map_siren | hetalt | 0.0000 | 1.3889 | 0.0000 | 0.0000 | 1 | 71 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I6_15 | map_siren | homalt | 35.9820 | 27.7778 | 51.0638 | 81.4961 | 25 | 65 | 24 | 23 | 20 | 86.9565 | |
| ciseli-custom | INDEL | D6_15 | map_siren | * | 62.3762 | 61.8861 | 62.8743 | 84.5131 | 315 | 194 | 315 | 186 | 97 | 52.1505 | |
| ciseli-custom | INDEL | D6_15 | map_siren | het | 69.4186 | 71.7857 | 67.2026 | 85.2327 | 201 | 79 | 209 | 102 | 21 | 20.5882 | |
| ciseli-custom | INDEL | D6_15 | map_siren | hetalt | 0.0000 | 7.0707 | 0.0000 | 0.0000 | 7 | 92 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | map_siren | homalt | 66.5025 | 82.3077 | 55.7895 | 83.1709 | 107 | 23 | 106 | 84 | 76 | 90.4762 | |
| ciseli-custom | INDEL | I1_5 | map_siren | * | 68.4975 | 64.7920 | 72.6525 | 80.4862 | 1947 | 1058 | 1942 | 731 | 614 | 83.9945 | |
| ciseli-custom | INDEL | I1_5 | map_siren | het | 73.5105 | 78.9411 | 68.7790 | 81.4258 | 1327 | 354 | 1335 | 606 | 517 | 85.3135 | |
| ciseli-custom | INDEL | I1_5 | map_siren | hetalt | 0.0000 | 7.1429 | 0.0000 | 0.0000 | 8 | 104 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I1_5 | map_siren | homalt | 62.7683 | 50.4950 | 82.9235 | 77.4631 | 612 | 600 | 607 | 125 | 97 | 77.6000 | |
| gduggal-snapplat | INDEL | I1_5 | map_siren | * | 81.2847 | 76.3062 | 86.9582 | 90.3597 | 2293 | 712 | 2307 | 346 | 22 | 6.3584 | |
| gduggal-snapplat | INDEL | I1_5 | map_siren | het | 80.2443 | 77.5134 | 83.1746 | 91.4579 | 1303 | 378 | 1310 | 265 | 10 | 3.7736 | |
| gduggal-snapplat | INDEL | I1_5 | map_siren | hetalt | 38.7454 | 26.7857 | 70.0000 | 97.4795 | 30 | 82 | 28 | 12 | 6 | 50.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_siren | homalt | 85.7005 | 79.2079 | 93.3526 | 86.1508 | 960 | 252 | 969 | 69 | 6 | 8.6957 | |
| gduggal-snapplat | SNP | ti | map_siren | * | 97.1306 | 96.0829 | 98.2013 | 65.7243 | 96424 | 3931 | 96473 | 1767 | 855 | 48.3871 | |
| gduggal-snapplat | SNP | ti | map_siren | het | 96.8090 | 96.4253 | 97.1959 | 70.5211 | 60152 | 2230 | 60242 | 1738 | 830 | 47.7560 | |
| gduggal-snapplat | SNP | ti | map_siren | hetalt | 89.5492 | 91.2281 | 87.9310 | 76.7068 | 52 | 5 | 51 | 7 | 7 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_siren | homalt | 97.6833 | 95.5270 | 99.9392 | 52.4384 | 36220 | 1696 | 36180 | 22 | 18 | 81.8182 | |
| gduggal-snapplat | SNP | tv | map_siren | * | 96.3584 | 95.1687 | 97.5782 | 71.5667 | 43711 | 2219 | 43717 | 1085 | 492 | 45.3456 | |
| gduggal-snapplat | SNP | tv | map_siren | het | 96.1131 | 95.9558 | 96.2709 | 75.9094 | 27452 | 1157 | 27468 | 1064 | 479 | 45.0188 | |
| gduggal-snapplat | SNP | tv | map_siren | hetalt | 87.2768 | 85.1852 | 89.4737 | 79.9472 | 69 | 12 | 68 | 8 | 8 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_siren | homalt | 96.8214 | 93.9095 | 99.9197 | 58.2133 | 16190 | 1050 | 16181 | 13 | 5 | 38.4615 | |
| gduggal-snapvard | INDEL | * | map_siren | * | 85.9947 | 88.0027 | 84.0764 | 84.1625 | 6521 | 889 | 7355 | 1393 | 670 | 48.0976 | |
| gduggal-snapvard | INDEL | * | map_siren | het | 85.6604 | 93.9663 | 78.7036 | 86.4515 | 4236 | 272 | 4978 | 1347 | 630 | 46.7706 | |
| gduggal-snapvard | INDEL | * | map_siren | hetalt | 0.0000 | 32.7935 | 0.0000 | 0.0000 | 81 | 166 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_siren | homalt | 89.9289 | 83.0132 | 98.1015 | 71.6674 | 2204 | 451 | 2377 | 46 | 40 | 86.9565 | |
| gduggal-snapplat | SNP | * | map_siren | * | 96.8913 | 95.7977 | 98.0103 | 67.7918 | 140083 | 6145 | 140139 | 2845 | 1340 | 47.1002 | |
| gduggal-snapplat | SNP | * | map_siren | het | 96.5899 | 96.2777 | 96.9043 | 72.4626 | 87604 | 3387 | 87710 | 2802 | 1309 | 46.7166 | |
| gduggal-snapplat | SNP | * | map_siren | hetalt | 87.2768 | 85.1852 | 89.4737 | 79.9472 | 69 | 12 | 68 | 8 | 8 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_siren | homalt | 97.4154 | 95.0214 | 99.9332 | 54.3867 | 52410 | 2746 | 52361 | 35 | 23 | 65.7143 | |
| gduggal-snapplat | INDEL | I16_PLUS | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 86 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 49 | 0 | 0 | 0 | |||