PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5351-5400 / 86044 show all | |||||||||||||||
| ckim-gatk | INDEL | C1_5 | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C1_5 | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C6_15 | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C6_15 | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C6_15 | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C6_15 | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | SNP | tv | map_siren | * | 98.9465 | 99.4753 | 98.4233 | 61.5086 | 45689 | 241 | 45694 | 732 | 69 | 9.4262 | |
| ckim-dragen | SNP | tv | map_siren | het | 98.4766 | 99.4128 | 97.5580 | 65.5354 | 28441 | 168 | 28444 | 712 | 52 | 7.3034 | |
| ckim-dragen | SNP | tv | map_siren | hetalt | 97.5610 | 98.7654 | 96.3855 | 74.6177 | 80 | 1 | 80 | 3 | 2 | 66.6667 | |
| ckim-dragen | SNP | tv | map_siren | homalt | 99.7415 | 99.5824 | 99.9011 | 51.8437 | 17168 | 72 | 17170 | 17 | 15 | 88.2353 | |
| ckim-dragen | INDEL | I6_15 | map_siren | * | 97.5369 | 97.3770 | 97.6974 | 85.1053 | 297 | 8 | 297 | 7 | 4 | 57.1429 | |
| ckim-dragen | INDEL | I6_15 | map_siren | het | 97.9021 | 97.9021 | 97.9021 | 87.2093 | 140 | 3 | 140 | 3 | 1 | 33.3333 | |
| ckim-dragen | INDEL | I6_15 | map_siren | hetalt | 96.4029 | 93.0556 | 100.0000 | 76.8966 | 67 | 5 | 67 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | map_siren | homalt | 97.8261 | 100.0000 | 95.7447 | 85.1501 | 90 | 0 | 90 | 4 | 3 | 75.0000 | |
| ckim-dragen | SNP | ti | map_siren | * | 99.0224 | 99.5177 | 98.5321 | 56.8522 | 99871 | 484 | 99880 | 1488 | 162 | 10.8871 | |
| ckim-dragen | SNP | ti | map_siren | het | 98.6081 | 99.5319 | 97.7013 | 60.9808 | 62090 | 292 | 62097 | 1461 | 137 | 9.3771 | |
| ckim-dragen | SNP | ti | map_siren | hetalt | 98.2759 | 100.0000 | 96.6102 | 72.1698 | 57 | 0 | 57 | 2 | 2 | 100.0000 | |
| ckim-dragen | SNP | ti | map_siren | homalt | 99.7132 | 99.4936 | 99.9338 | 47.4447 | 37724 | 192 | 37726 | 25 | 23 | 92.0000 | |
| ckim-gatk | INDEL | D1_5 | map_siren | * | 98.1530 | 99.2066 | 97.1215 | 84.5697 | 3501 | 28 | 3509 | 104 | 9 | 8.6539 | |
| ckim-gatk | INDEL | D1_5 | map_siren | het | 97.6349 | 99.5169 | 95.8228 | 85.4351 | 2266 | 11 | 2271 | 99 | 5 | 5.0505 | |
| ckim-gatk | INDEL | D1_5 | map_siren | hetalt | 93.6709 | 88.0952 | 100.0000 | 91.2218 | 74 | 10 | 74 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_siren | homalt | 99.4864 | 99.4007 | 99.5723 | 81.4444 | 1161 | 7 | 1164 | 5 | 4 | 80.0000 | |
| ckim-gatk | INDEL | I1_5 | map_siren | * | 98.4771 | 98.8020 | 98.1543 | 83.2514 | 2969 | 36 | 2978 | 56 | 9 | 16.0714 | |
| ckim-gatk | INDEL | I1_5 | map_siren | het | 97.9415 | 98.8102 | 97.0879 | 85.2732 | 1661 | 20 | 1667 | 50 | 5 | 10.0000 | |
| ckim-gatk | INDEL | I1_5 | map_siren | hetalt | 95.3271 | 91.0714 | 100.0000 | 86.8047 | 102 | 10 | 102 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | map_siren | homalt | 99.5056 | 99.5050 | 99.5062 | 78.6204 | 1206 | 6 | 1209 | 6 | 4 | 66.6667 | |
| ckim-gatk | INDEL | I6_15 | map_siren | * | 97.5207 | 96.7213 | 98.3333 | 85.9287 | 295 | 10 | 295 | 5 | 2 | 40.0000 | |
| ckim-gatk | INDEL | I6_15 | map_siren | het | 96.8198 | 95.8042 | 97.8571 | 88.4774 | 137 | 6 | 137 | 3 | 1 | 33.3333 | |
| ckim-gatk | INDEL | I6_15 | map_siren | hetalt | 97.8723 | 95.8333 | 100.0000 | 76.6892 | 69 | 3 | 69 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | map_siren | homalt | 98.3425 | 98.8889 | 97.8022 | 85.3462 | 89 | 1 | 89 | 2 | 1 | 50.0000 | |
| ckim-gatk | SNP | * | map_siren | * | 94.1020 | 89.7981 | 98.8391 | 66.9681 | 131310 | 14918 | 131287 | 1542 | 125 | 8.1064 | |
| ckim-gatk | SNP | * | map_siren | het | 95.8468 | 93.5653 | 98.2423 | 71.0090 | 85136 | 5855 | 85122 | 1523 | 109 | 7.1569 | |
| ckim-gatk | SNP | * | map_siren | hetalt | 87.2483 | 80.2469 | 95.5882 | 82.7848 | 65 | 16 | 65 | 3 | 2 | 66.6667 | |
| ckim-gatk | SNP | * | map_siren | homalt | 91.0516 | 83.5974 | 99.9653 | 55.1658 | 46109 | 9047 | 46100 | 16 | 14 | 87.5000 | |
| ckim-gatk | SNP | ti | map_siren | * | 94.6168 | 90.5675 | 99.0452 | 64.7326 | 90889 | 9466 | 90874 | 876 | 96 | 10.9589 | |
| ckim-gatk | SNP | ti | map_siren | het | 96.2259 | 94.0079 | 98.5512 | 68.8261 | 58644 | 3738 | 58635 | 862 | 83 | 9.6288 | |
| ckim-gatk | SNP | ti | map_siren | hetalt | 87.6190 | 80.7018 | 95.8333 | 80.9524 | 46 | 11 | 46 | 2 | 2 | 100.0000 | |
| ckim-gatk | SNP | ti | map_siren | homalt | 91.8305 | 84.9219 | 99.9627 | 53.3585 | 32199 | 5717 | 32193 | 12 | 11 | 91.6667 | |
| ckim-gatk | INDEL | I16_PLUS | map_siren | * | 96.5778 | 97.6744 | 95.5056 | 93.0031 | 84 | 2 | 85 | 4 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_siren | het | 95.0495 | 97.9592 | 92.3077 | 92.5926 | 48 | 1 | 48 | 4 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_siren | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.9558 | 16 | 0 | 17 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | map_siren | homalt | 97.5610 | 95.2381 | 100.0000 | 95.6236 | 20 | 1 | 20 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | map_siren | * | 93.4849 | 95.8042 | 91.2752 | 95.1513 | 137 | 6 | 136 | 13 | 2 | 15.3846 | |
| ckim-gatk | INDEL | D16_PLUS | map_siren | het | 91.8695 | 97.4359 | 86.9048 | 96.2700 | 76 | 2 | 73 | 11 | 2 | 18.1818 | |
| ckim-gatk | INDEL | D16_PLUS | map_siren | hetalt | 94.9153 | 90.3226 | 100.0000 | 80.7692 | 28 | 3 | 30 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | map_siren | homalt | 95.6522 | 97.0588 | 94.2857 | 94.7368 | 33 | 1 | 33 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | map_siren | * | 97.2468 | 97.2495 | 97.2441 | 86.7501 | 495 | 14 | 494 | 14 | 2 | 14.2857 | |
| ckim-gatk | INDEL | D6_15 | map_siren | het | 96.8229 | 98.2143 | 95.4704 | 89.1534 | 275 | 5 | 274 | 13 | 2 | 15.3846 | |
| ckim-gatk | INDEL | D6_15 | map_siren | hetalt | 96.8750 | 93.9394 | 100.0000 | 75.7180 | 93 | 6 | 93 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_siren | homalt | 98.4496 | 97.6923 | 99.2188 | 84.0994 | 127 | 3 | 127 | 1 | 0 | 0.0000 | |