PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53201-53250 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.5262 | 99.6838 | 99.3691 | 86.9359 | 1261 | 4 | 1260 | 8 | 6 | 75.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.3720 | 99.7481 | 98.9987 | 88.0853 | 792 | 2 | 791 | 8 | 6 | 75.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.6667 | 2 | 0 | 2 | 0 | 0 | ||
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.7863 | 99.5736 | 100.0000 | 84.3551 | 467 | 2 | 467 | 0 | 0 | ||
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.1395 | 99.1848 | 99.0942 | 85.7787 | 1095 | 9 | 1094 | 10 | 8 | 80.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.1682 | 99.4444 | 98.8935 | 86.9353 | 716 | 4 | 715 | 8 | 7 | 87.5000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.9091 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.0826 | 98.6945 | 99.4737 | 82.8674 | 378 | 5 | 378 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.3458 | 99.4510 | 99.2408 | 86.4188 | 2355 | 13 | 2353 | 18 | 14 | 77.7778 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.2751 | 99.6037 | 98.9488 | 87.5654 | 1508 | 6 | 1506 | 16 | 13 | 81.2500 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.6667 | 2 | 0 | 2 | 0 | 0 | ||
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.4703 | 99.1784 | 99.7639 | 83.7209 | 845 | 7 | 845 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 92.2757 | 91.7744 | 92.7824 | 61.6372 | 1774 | 159 | 1774 | 138 | 138 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 87.0552 | 97.3435 | 78.7338 | 77.6244 | 513 | 14 | 485 | 131 | 131 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 91.6249 | 85.0636 | 99.2832 | 28.0928 | 803 | 141 | 831 | 6 | 6 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.4571 | 99.1342 | 99.7821 | 56.9822 | 458 | 4 | 458 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 88.3660 | 81.6425 | 96.2963 | 68.1777 | 338 | 76 | 338 | 13 | 13 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 87.0071 | 83.0189 | 91.3978 | 81.9767 | 88 | 18 | 85 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 88.5924 | 80.0699 | 99.1453 | 49.0196 | 229 | 57 | 232 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 91.3043 | 95.4545 | 87.5000 | 81.2500 | 21 | 1 | 21 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.2389 | 96.9229 | 97.5570 | 48.8051 | 10741 | 341 | 10742 | 269 | 266 | 98.8848 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 96.0400 | 99.0531 | 93.2047 | 66.1798 | 3243 | 31 | 3237 | 236 | 234 | 99.1525 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.1701 | 95.0166 | 99.4235 | 24.0070 | 5167 | 271 | 5174 | 30 | 29 | 96.6667 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.1071 | 98.3544 | 99.8715 | 46.8458 | 2331 | 39 | 2331 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 93.8149 | 89.8021 | 98.2032 | 50.1554 | 2677 | 304 | 2678 | 49 | 47 | 95.9184 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 93.9948 | 94.0299 | 93.9597 | 71.1380 | 567 | 36 | 560 | 36 | 34 | 94.4444 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 93.8172 | 88.6758 | 99.5914 | 32.3428 | 1942 | 248 | 1950 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 93.0748 | 89.3617 | 97.1098 | 66.2109 | 168 | 20 | 168 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.9093 | 97.5848 | 98.2359 | 39.6520 | 17818 | 441 | 17820 | 320 | 305 | 95.3125 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.7184 | 99.3562 | 96.1338 | 51.2081 | 6636 | 43 | 6639 | 267 | 254 | 95.1311 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.3292 | 95.2834 | 99.4647 | 22.7525 | 6505 | 322 | 6504 | 35 | 34 | 97.1429 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.0051 | 98.4010 | 99.6166 | 36.8952 | 4677 | 76 | 4677 | 18 | 17 | 94.4444 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.0321 | 95.0607 | 99.0869 | 48.8550 | 5639 | 293 | 5643 | 52 | 49 | 94.2308 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.4850 | 97.5225 | 97.4474 | 70.6155 | 1299 | 33 | 1298 | 34 | 32 | 94.1176 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.6894 | 93.8694 | 99.6841 | 24.6230 | 3782 | 247 | 3787 | 12 | 12 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.3260 | 97.7233 | 98.9362 | 63.8924 | 558 | 13 | 558 | 6 | 5 | 83.3333 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 78.9525 | 73.1884 | 85.7021 | 53.5402 | 303 | 111 | 1001 | 167 | 136 | 81.4371 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 85.1694 | 82.0755 | 88.5057 | 59.1549 | 87 | 19 | 462 | 60 | 43 | 71.6667 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 80.0302 | 67.8322 | 97.5771 | 39.4667 | 194 | 92 | 443 | 11 | 8 | 72.7273 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 66.6667 | 100.0000 | 50.0000 | 60.4938 | 22 | 0 | 96 | 96 | 85 | 88.5417 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 89.7127 | 90.8139 | 88.6378 | 45.2529 | 10064 | 1018 | 10984 | 1408 | 719 | 51.0653 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 91.7464 | 96.2737 | 87.6259 | 45.7712 | 3152 | 122 | 8703 | 1229 | 548 | 44.5891 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 85.1600 | 0.0000 | 0.0000 | 4631 | 807 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 94.4513 | 96.2447 | 92.7236 | 43.0556 | 2281 | 89 | 2281 | 179 | 171 | 95.5307 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 94.7018 | 96.2862 | 93.1687 | 88.3587 | 1063 | 41 | 1132 | 83 | 31 | 37.3494 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 93.1982 | 95.0000 | 91.4634 | 89.5261 | 684 | 36 | 750 | 70 | 22 | 31.4286 | |