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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53001-53050 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 96.2858 | 94.6860 | 97.9405 | 73.0746 | 392 | 22 | 428 | 9 | 6 | 66.6667 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 95.5134 | 92.4528 | 98.7835 | 71.4781 | 98 | 8 | 406 | 5 | 2 | 40.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 95.1049 | 0.0000 | 0.0000 | 272 | 14 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 91.6667 | 100.0000 | 84.6154 | 85.7143 | 22 | 0 | 22 | 4 | 4 | 100.0000 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.9495 | 96.9056 | 99.0161 | 33.0779 | 17694 | 565 | 18416 | 183 | 178 | 97.2678 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.8138 | 96.2869 | 99.3900 | 32.9111 | 6431 | 248 | 13686 | 84 | 81 | 96.4286 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 95.4885 | 0.0000 | 0.0000 | 6519 | 308 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.8715 | 99.8106 | 97.9499 | 33.5489 | 4744 | 9 | 4730 | 99 | 97 | 97.9798 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.9914 | 97.4553 | 98.5335 | 44.4822 | 10800 | 282 | 11758 | 175 | 165 | 94.2857 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.4377 | 98.0757 | 98.8024 | 44.1799 | 3211 | 63 | 9405 | 114 | 104 | 91.2281 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 96.0463 | 0.0000 | 0.0000 | 5223 | 215 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.6381 | 99.8312 | 97.4731 | 45.6429 | 2366 | 4 | 2353 | 61 | 61 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.6989 | 96.2429 | 99.1997 | 49.1264 | 2869 | 112 | 2975 | 24 | 22 | 91.6667 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.5313 | 97.5124 | 99.5716 | 47.3892 | 588 | 15 | 2789 | 12 | 10 | 83.3333 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 95.5708 | 0.0000 | 0.0000 | 2093 | 97 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 96.8750 | 100.0000 | 93.9394 | 65.3240 | 188 | 0 | 186 | 12 | 12 | 100.0000 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 56.2607 | 88.9328 | 41.1449 | 83.1108 | 1125 | 140 | 1150 | 1645 | 97 | 5.8967 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 48.6704 | 84.3829 | 34.1974 | 80.6855 | 670 | 124 | 686 | 1320 | 25 | 1.8939 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 33.3333 | 50.0000 | 25.0000 | 73.3333 | 1 | 1 | 1 | 3 | 0 | 0.0000 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 73.3002 | 96.8017 | 58.9809 | 87.2316 | 454 | 15 | 463 | 322 | 72 | 22.3602 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.9458 | 97.7276 | 98.1651 | 56.3127 | 31265 | 727 | 31189 | 583 | 575 | 98.6278 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.2927 | 99.2413 | 99.3442 | 65.4836 | 12426 | 95 | 12270 | 81 | 75 | 92.5926 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.9831 | 94.4710 | 99.6324 | 29.8141 | 10491 | 614 | 10571 | 39 | 39 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 97.1997 | 99.7848 | 94.7452 | 59.6307 | 8348 | 18 | 8348 | 463 | 461 | 99.5680 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 53.2420 | 85.0543 | 38.7490 | 79.7595 | 939 | 165 | 985 | 1557 | 105 | 6.7437 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 46.0775 | 80.1389 | 32.3344 | 77.7959 | 577 | 143 | 615 | 1287 | 33 | 2.5641 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 88.8889 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 71.8123 | 94.5170 | 57.9030 | 83.9608 | 362 | 21 | 370 | 269 | 72 | 26.7658 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 17.6716 | 10.8017 | 48.5470 | 60.1499 | 322 | 2659 | 284 | 301 | 281 | 93.3555 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 44.4700 | 32.0066 | 72.8302 | 65.6291 | 193 | 410 | 193 | 72 | 61 | 84.7222 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 1.6895 | 0.0000 | 0.0000 | 37 | 2153 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 35.9715 | 48.9362 | 28.4375 | 54.0890 | 92 | 96 | 91 | 229 | 220 | 96.0699 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 40.9601 | 29.3830 | 67.5918 | 54.6739 | 1743 | 4189 | 1583 | 759 | 616 | 81.1594 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 80.2108 | 82.2072 | 78.3091 | 58.4509 | 1095 | 237 | 1130 | 313 | 202 | 64.5367 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 4.6910 | 0.0000 | 0.0000 | 189 | 3840 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 61.9472 | 80.3853 | 50.3893 | 46.9303 | 459 | 112 | 453 | 446 | 414 | 92.8251 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 47.2088 | 43.9090 | 51.0447 | 54.2294 | 4866 | 6216 | 4886 | 4686 | 4047 | 86.3636 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 72.4338 | 76.9090 | 68.4508 | 62.7083 | 2518 | 756 | 2788 | 1285 | 845 | 65.7588 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 4.3582 | 0.0000 | 0.0000 | 237 | 5201 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 53.4223 | 89.0717 | 38.1524 | 44.9605 | 2111 | 259 | 2098 | 3401 | 3202 | 94.1488 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 5.7971 | 3.3816 | 20.2899 | 80.2292 | 14 | 400 | 14 | 55 | 47 | 85.4545 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 9.4488 | 5.6604 | 28.5714 | 87.7907 | 6 | 100 | 6 | 15 | 12 | 80.0000 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 286 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 22.8571 | 36.3636 | 16.6667 | 72.8814 | 8 | 14 | 8 | 40 | 35 | 87.5000 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 54.8494 | 87.1622 | 40.0150 | 81.6424 | 2064 | 304 | 2128 | 3190 | 200 | 6.2696 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 47.3815 | 82.3646 | 33.2564 | 79.3607 | 1247 | 267 | 1297 | 2603 | 57 | 2.1898 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 33.3333 | 50.0000 | 25.0000 | 73.3333 | 1 | 1 | 1 | 3 | 0 | 0.0000 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 72.7873 | 95.7746 | 58.6987 | 85.9415 | 816 | 36 | 830 | 584 | 143 | 24.4863 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 96.4441 | 94.9275 | 98.0100 | 72.9839 | 393 | 21 | 394 | 8 | 8 | 100.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.0874 | 94.3396 | 100.0000 | 86.5762 | 100 | 6 | 89 | 0 | 0 | ||