PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5201-5250 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | D6_15 | segdup | homalt | 96.0000 | 100.0000 | 92.3077 | 90.7308 | 50 | 0 | 48 | 4 | 4 | 100.0000 | |
| cchapple-custom | INDEL | I16_PLUS | segdup | * | 98.9691 | 100.0000 | 97.9592 | 95.9098 | 47 | 0 | 48 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | segdup | het | 98.3051 | 100.0000 | 96.6667 | 96.7285 | 24 | 0 | 29 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | segdup | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 4 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | segdup | * | 94.8714 | 94.8276 | 94.9153 | 95.0833 | 55 | 3 | 56 | 3 | 3 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | segdup | het | 96.7033 | 100.0000 | 93.6170 | 95.2090 | 37 | 0 | 44 | 3 | 3 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | segdup | hetalt | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 6 | 3 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 94.5205 | 12 | 0 | 12 | 0 | 0 | ||
| ciseli-custom | SNP | ti | segdup | * | 97.2840 | 98.8381 | 95.7779 | 90.5362 | 19310 | 227 | 19237 | 848 | 118 | 13.9151 | |
| ciseli-custom | SNP | ti | segdup | het | 96.4948 | 98.3957 | 94.6659 | 91.6122 | 11837 | 193 | 11802 | 665 | 19 | 2.8571 | |
| ciseli-custom | SNP | ti | segdup | hetalt | 80.0000 | 100.0000 | 66.6667 | 96.5909 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| ciseli-custom | SNP | ti | segdup | homalt | 98.5690 | 99.5470 | 97.6100 | 88.0096 | 7471 | 34 | 7433 | 182 | 99 | 54.3956 | |
| ciseli-custom | SNP | tv | segdup | * | 95.0488 | 98.0661 | 92.2117 | 92.0351 | 8367 | 165 | 8347 | 705 | 88 | 12.4823 | |
| ciseli-custom | SNP | tv | segdup | het | 93.4710 | 97.3331 | 89.9038 | 92.8401 | 5146 | 141 | 5138 | 577 | 16 | 2.7730 | |
| ciseli-custom | SNP | tv | segdup | hetalt | 85.7143 | 85.7143 | 85.7143 | 95.0704 | 6 | 1 | 6 | 1 | 0 | 0.0000 | |
| ciseli-custom | SNP | tv | segdup | homalt | 97.7133 | 99.2897 | 96.1862 | 90.1152 | 3215 | 23 | 3203 | 127 | 72 | 56.6929 | |
| ckim-dragen | INDEL | * | segdup | * | 97.1040 | 99.1784 | 95.1146 | 95.2650 | 2535 | 21 | 2531 | 130 | 14 | 10.7692 | |
| ckim-dragen | INDEL | * | segdup | het | 95.8400 | 99.3861 | 92.5383 | 95.9567 | 1457 | 9 | 1451 | 117 | 2 | 1.7094 | |
| ckim-dragen | INDEL | * | segdup | hetalt | 95.5823 | 91.5385 | 100.0000 | 94.5025 | 119 | 11 | 121 | 0 | 0 | ||
| ckim-dragen | INDEL | * | segdup | homalt | 99.2754 | 99.8958 | 98.6626 | 93.6124 | 959 | 1 | 959 | 13 | 12 | 92.3077 | |
| ciseli-custom | SNP | * | segdup | * | 96.6280 | 98.6033 | 94.7303 | 91.0474 | 27675 | 392 | 27504 | 1530 | 201 | 13.1373 | |
| ciseli-custom | SNP | * | segdup | het | 95.5747 | 98.0713 | 93.2020 | 92.0353 | 16983 | 334 | 16891 | 1232 | 33 | 2.6786 | |
| ciseli-custom | SNP | * | segdup | hetalt | 85.7143 | 85.7143 | 85.7143 | 95.0704 | 6 | 1 | 6 | 1 | 0 | 0.0000 | |
| ciseli-custom | SNP | * | segdup | homalt | 98.3606 | 99.4694 | 97.2762 | 88.7149 | 10686 | 57 | 10607 | 297 | 168 | 56.5657 | |
| ciseli-custom | INDEL | D6_15 | segdup | * | 68.3802 | 65.4450 | 71.5909 | 94.3207 | 125 | 66 | 126 | 50 | 32 | 64.0000 | |
| ciseli-custom | INDEL | D6_15 | segdup | het | 78.3734 | 80.4348 | 76.4151 | 94.8494 | 74 | 18 | 81 | 25 | 8 | 32.0000 | |
| ciseli-custom | INDEL | D6_15 | segdup | hetalt | 0.0000 | 12.2449 | 0.0000 | 0.0000 | 6 | 43 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | segdup | homalt | 75.0000 | 90.0000 | 64.2857 | 93.2757 | 45 | 5 | 45 | 25 | 24 | 96.0000 | |
| ciseli-custom | INDEL | I1_5 | segdup | * | 88.5870 | 87.6298 | 89.5652 | 93.7669 | 928 | 131 | 927 | 108 | 88 | 81.4815 | |
| ciseli-custom | INDEL | I1_5 | segdup | het | 90.6052 | 93.4944 | 87.8893 | 95.0934 | 503 | 35 | 508 | 70 | 50 | 71.4286 | |
| ciseli-custom | INDEL | I1_5 | segdup | hetalt | 0.0000 | 6.2500 | 0.0000 | 0.0000 | 3 | 45 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I1_5 | segdup | homalt | 90.4345 | 89.2178 | 91.6849 | 90.5285 | 422 | 51 | 419 | 38 | 38 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | segdup | * | 43.2432 | 32.0000 | 66.6667 | 89.6021 | 56 | 119 | 54 | 27 | 25 | 92.5926 | |
| ciseli-custom | INDEL | I6_15 | segdup | het | 58.0153 | 45.7831 | 79.1667 | 89.8520 | 38 | 45 | 38 | 10 | 9 | 90.0000 | |
| ciseli-custom | INDEL | I6_15 | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 45 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I6_15 | segdup | homalt | 42.7935 | 38.2979 | 48.4848 | 89.2157 | 18 | 29 | 16 | 17 | 16 | 94.1176 | |
| ciseli-custom | INDEL | I16_PLUS | segdup | * | 21.9321 | 12.7660 | 77.7778 | 96.3415 | 6 | 41 | 7 | 2 | 0 | 0.0000 | |
| ciseli-custom | INDEL | I16_PLUS | segdup | het | 7.4074 | 4.1667 | 33.3333 | 97.7778 | 1 | 23 | 1 | 2 | 0 | 0.0000 | |
| ciseli-custom | INDEL | I16_PLUS | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I16_PLUS | segdup | homalt | 41.6667 | 26.3158 | 100.0000 | 94.5946 | 5 | 14 | 6 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | segdup | * | 95.2880 | 95.2880 | 95.2880 | 94.6959 | 182 | 9 | 182 | 9 | 5 | 55.5556 | |
| ckim-dragen | INDEL | D6_15 | segdup | het | 96.7742 | 97.8261 | 95.7447 | 96.0338 | 90 | 2 | 90 | 4 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | segdup | hetalt | 92.3077 | 85.7143 | 100.0000 | 89.7810 | 42 | 7 | 42 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | segdup | homalt | 95.2381 | 100.0000 | 90.9091 | 93.2927 | 50 | 0 | 50 | 5 | 5 | 100.0000 | |
| ckim-dragen | INDEL | I16_PLUS | segdup | * | 100.0000 | 100.0000 | 100.0000 | 96.6284 | 47 | 0 | 47 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | segdup | het | 100.0000 | 100.0000 | 100.0000 | 97.2540 | 24 | 0 | 24 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.3684 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 94.8370 | 19 | 0 | 19 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | segdup | * | 97.2226 | 99.2446 | 95.2813 | 95.0536 | 1051 | 8 | 1050 | 52 | 5 | 9.6154 | |
| ckim-dragen | INDEL | I1_5 | segdup | het | 95.3418 | 99.2565 | 91.7241 | 96.0707 | 534 | 4 | 532 | 48 | 1 | 2.0833 | |