PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52401-52450 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.8903 | 96.4792 | 99.3433 | 38.3411 | 9125 | 333 | 9076 | 60 | 45 | 75.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.7075 | 98.2437 | 99.1757 | 52.7025 | 2685 | 48 | 2647 | 22 | 8 | 36.3636 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.9114 | 94.6773 | 99.2536 | 28.7725 | 4518 | 254 | 4521 | 34 | 34 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.0970 | 98.4127 | 99.7908 | 31.1983 | 1922 | 31 | 1908 | 4 | 3 | 75.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 100.0000 | 95.9052 | 0 | 0 | 76 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 100.0000 | 94.8590 | 0 | 0 | 31 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 100.0000 | 96.0954 | 0 | 0 | 36 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.2810 | 0 | 0 | 9 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.2339 | 95.3125 | 99.2344 | 58.7664 | 1708 | 84 | 1685 | 13 | 10 | 76.9231 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.5360 | 94.4171 | 98.7522 | 73.2347 | 575 | 34 | 554 | 7 | 4 | 57.1429 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.3359 | 95.5357 | 99.2053 | 39.4061 | 749 | 35 | 749 | 6 | 6 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.0843 | 96.2406 | 100.0000 | 50.7732 | 384 | 15 | 382 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 87.0717 | 78.5417 | 97.6804 | 73.6054 | 377 | 103 | 379 | 9 | 9 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 88.5017 | 79.3750 | 100.0000 | 77.5510 | 127 | 33 | 121 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 85.3493 | 75.9857 | 97.3451 | 70.8010 | 212 | 67 | 220 | 6 | 6 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 92.6829 | 92.6829 | 92.6829 | 73.8854 | 38 | 3 | 38 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.2308 | 97.0167 | 99.4755 | 56.4489 | 5561 | 171 | 5690 | 30 | 15 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.2468 | 97.8723 | 98.6242 | 69.6350 | 1334 | 29 | 1362 | 19 | 4 | 21.0526 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 98.1325 | 96.5309 | 99.7881 | 46.4918 | 3673 | 132 | 3767 | 8 | 8 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.8436 | 98.2270 | 99.4681 | 63.1613 | 554 | 10 | 561 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.5723 | 95.7711 | 99.4425 | 60.5281 | 2310 | 102 | 2319 | 13 | 8 | 61.5385 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.2332 | 97.3361 | 99.1471 | 75.0399 | 475 | 13 | 465 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.3152 | 95.0875 | 99.6497 | 51.5280 | 1684 | 87 | 1707 | 6 | 5 | 83.3333 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.3452 | 98.6928 | 98.0000 | 69.6970 | 151 | 2 | 147 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 46.2416 | 43.0804 | 49.9034 | 66.9082 | 772 | 1020 | 775 | 778 | 771 | 99.1003 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 56.9927 | 87.3563 | 42.2925 | 67.1172 | 532 | 77 | 535 | 730 | 725 | 99.3151 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.2551 | 0.0000 | 0.0000 | 2 | 782 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 69.5297 | 59.6491 | 83.3333 | 65.9574 | 238 | 161 | 240 | 48 | 46 | 95.8333 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 57.8545 | 55.6351 | 60.2584 | 48.5091 | 20358 | 16234 | 20333 | 13410 | 13207 | 98.4862 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 66.9508 | 90.0254 | 53.2915 | 48.7249 | 14188 | 1572 | 14272 | 12509 | 12414 | 99.2405 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.8401 | 0.0000 | 0.0000 | 88 | 10387 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 70.1373 | 58.7236 | 87.0583 | 47.6620 | 6082 | 4275 | 6061 | 901 | 793 | 88.0133 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 36.9719 | 33.9924 | 40.5239 | 46.0310 | 3215 | 6243 | 3218 | 4723 | 4680 | 99.0896 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 50.2642 | 88.4376 | 35.1094 | 44.6429 | 2417 | 316 | 2438 | 4506 | 4477 | 99.3564 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.3772 | 0.0000 | 0.0000 | 18 | 4754 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 52.8814 | 39.9386 | 78.2347 | 54.0553 | 780 | 1173 | 780 | 217 | 203 | 93.5484 | |
| jpowers-varprowl | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 61.3754 | 57.2372 | 66.1586 | 39.2942 | 14046 | 10494 | 14021 | 7172 | 7085 | 98.7869 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 71.5972 | 91.9862 | 58.6068 | 39.8738 | 9573 | 834 | 9608 | 6786 | 6745 | 99.3958 | |