PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52301-52350 / 86044 show all | |||||||||||||||
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 94.1706 | 97.3744 | 91.1708 | 74.9459 | 4710 | 127 | 4750 | 460 | 136 | 29.5652 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 94.8529 | 96.2516 | 93.4942 | 76.5691 | 3030 | 118 | 3061 | 213 | 10 | 4.6948 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 92.9799 | 99.5261 | 87.2417 | 71.6212 | 1680 | 8 | 1689 | 247 | 126 | 51.0121 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 35.1693 | 26.0417 | 54.1485 | 80.6424 | 125 | 355 | 124 | 105 | 103 | 98.0952 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 57.9710 | 62.5000 | 54.0541 | 80.8884 | 100 | 60 | 100 | 85 | 84 | 98.8235 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.3584 | 0.0000 | 0.0000 | 1 | 278 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 56.4706 | 58.5366 | 54.5455 | 79.5349 | 24 | 17 | 24 | 20 | 19 | 95.0000 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 43.8042 | 29.8151 | 82.5243 | 69.3041 | 1709 | 4023 | 1700 | 360 | 316 | 87.7778 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 86.2568 | 87.6742 | 84.8845 | 71.5339 | 1195 | 168 | 1213 | 216 | 204 | 94.4444 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.5782 | 0.0000 | 0.0000 | 22 | 3783 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 81.8991 | 87.2340 | 77.1791 | 62.6848 | 492 | 72 | 487 | 144 | 112 | 77.7778 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 31.2372 | 20.6053 | 64.5372 | 76.8976 | 497 | 1915 | 495 | 272 | 252 | 92.6471 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 71.2396 | 76.0246 | 67.0213 | 78.1818 | 371 | 117 | 378 | 186 | 179 | 96.2366 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.5082 | 0.0000 | 0.0000 | 9 | 1762 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 65.7303 | 76.4706 | 57.6355 | 72.3810 | 117 | 36 | 117 | 86 | 73 | 84.8837 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 95.1147 | 97.5960 | 92.7564 | 74.4795 | 9459 | 233 | 9540 | 745 | 245 | 32.8859 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 95.5170 | 96.4240 | 94.6270 | 76.4781 | 6013 | 223 | 6076 | 345 | 14 | 4.0580 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 94.4249 | 99.7395 | 89.6480 | 70.2838 | 3446 | 9 | 3464 | 400 | 231 | 57.7500 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.9756 | 96.4774 | 99.5211 | 49.0897 | 35303 | 1289 | 35537 | 171 | 109 | 63.7427 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.8607 | 96.3706 | 99.3977 | 55.2797 | 15188 | 572 | 15184 | 92 | 32 | 34.7826 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.8607 | 94.4535 | 99.3939 | 46.6406 | 9894 | 581 | 10167 | 62 | 61 | 98.3871 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.2568 | 98.6869 | 99.8334 | 39.3004 | 10221 | 136 | 10186 | 17 | 16 | 94.1176 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 94.1176 | 95.7393 | 0 | 0 | 16 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 100.0000 | 96.5278 | 0 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 88.8889 | 94.6746 | 0 | 0 | 8 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 100.0000 | 96.5116 | 0 | 0 | 3 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.4668 | 93.9469 | 99.1255 | 62.0415 | 2266 | 146 | 2267 | 20 | 13 | 65.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.3238 | 98.3607 | 98.2869 | 82.7101 | 480 | 8 | 459 | 8 | 2 | 25.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 95.9181 | 92.2078 | 99.9396 | 36.0371 | 1633 | 138 | 1655 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 96.5300 | 100.0000 | 93.2927 | 77.6871 | 153 | 0 | 153 | 11 | 10 | 90.9091 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.4981 | 97.9421 | 99.0604 | 41.3577 | 24035 | 505 | 24037 | 228 | 220 | 96.4912 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.0868 | 99.0968 | 99.0767 | 50.8276 | 10313 | 94 | 10302 | 96 | 89 | 92.7083 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.7472 | 94.1475 | 99.4946 | 23.8423 | 6483 | 403 | 6496 | 33 | 33 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.2664 | 99.8896 | 98.6509 | 37.0615 | 7239 | 8 | 7239 | 99 | 98 | 98.9899 | |
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.9111 | 99.8223 | 100.0000 | 64.1566 | 1685 | 3 | 1685 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.6909 | 99.6293 | 99.7526 | 66.9619 | 4838 | 18 | 4838 | 12 | 9 | 75.0000 | |
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.6438 | 99.6438 | 99.6438 | 69.4439 | 3077 | 11 | 3077 | 11 | 8 | 72.7273 | |
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.8333 | 1 | 0 | 1 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.7732 | 99.6038 | 99.9432 | 61.2967 | 1760 | 7 | 1760 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.1541 | 94.6964 | 99.7428 | 58.3391 | 5428 | 304 | 5429 | 14 | 11 | 78.5714 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.1862 | 98.8261 | 99.5489 | 78.4824 | 1347 | 16 | 1324 | 6 | 3 | 50.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.0820 | 92.4836 | 99.9718 | 25.6399 | 3519 | 286 | 3543 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.2056 | 99.6454 | 98.7698 | 73.1350 | 562 | 2 | 562 | 7 | 7 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.6078 | 97.2827 | 97.9351 | 45.4096 | 9201 | 257 | 9201 | 194 | 187 | 96.3918 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.5546 | 98.8657 | 96.2777 | 63.5724 | 2702 | 31 | 2690 | 104 | 99 | 95.1923 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.3148 | 95.2850 | 99.4329 | 24.6012 | 4547 | 225 | 4559 | 26 | 26 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.3623 | 99.9488 | 96.8254 | 41.7173 | 1952 | 1 | 1952 | 64 | 62 | 96.8750 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 95.1199 | 93.3333 | 96.9762 | 82.0124 | 448 | 32 | 449 | 14 | 10 | 71.4286 | |