PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5151-5200 / 86044 show all | |||||||||||||||
| ckim-gatk | INDEL | C1_5 | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C1_5 | segdup | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C6_15 | segdup | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C6_15 | segdup | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C6_15 | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C6_15 | segdup | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | * | segdup | * | 97.7045 | 99.0219 | 96.4218 | 95.7792 | 2531 | 25 | 2533 | 94 | 10 | 10.6383 | |
| ckim-gatk | INDEL | * | segdup | het | 96.8043 | 99.1814 | 94.5384 | 96.5594 | 1454 | 12 | 1454 | 84 | 1 | 1.1905 | |
| ckim-gatk | INDEL | * | segdup | hetalt | 95.5823 | 91.5385 | 100.0000 | 94.4622 | 119 | 11 | 121 | 0 | 0 | ||
| ckim-gatk | INDEL | * | segdup | homalt | 99.3776 | 99.7917 | 98.9669 | 93.6950 | 958 | 2 | 958 | 10 | 9 | 90.0000 | |
| ckim-dragen | INDEL | I6_15 | segdup | * | 97.1910 | 98.8571 | 95.5801 | 93.3013 | 173 | 2 | 173 | 8 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | segdup | het | 94.7977 | 98.7952 | 91.1111 | 94.6429 | 82 | 1 | 82 | 8 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | segdup | hetalt | 98.8764 | 97.7778 | 100.0000 | 89.2421 | 44 | 1 | 44 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 92.3328 | 47 | 0 | 47 | 0 | 0 | ||
| ckim-dragen | SNP | ti | segdup | * | 98.5623 | 99.8106 | 97.3449 | 91.6401 | 19500 | 37 | 19505 | 532 | 9 | 1.6917 | |
| ckim-dragen | SNP | ti | segdup | het | 97.7495 | 99.7922 | 95.7888 | 93.1126 | 12005 | 25 | 12010 | 528 | 5 | 0.9470 | |
| ckim-dragen | SNP | ti | segdup | hetalt | 80.0000 | 100.0000 | 66.6667 | 98.6607 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | ti | segdup | homalt | 99.9000 | 99.8401 | 99.9600 | 86.9440 | 7493 | 12 | 7493 | 3 | 3 | 100.0000 | |
| ckim-dragen | SNP | tv | segdup | * | 98.3491 | 99.8476 | 96.8949 | 93.2025 | 8519 | 13 | 8519 | 273 | 6 | 2.1978 | |
| ckim-dragen | SNP | tv | segdup | het | 97.4236 | 99.7730 | 95.1822 | 94.3912 | 5275 | 12 | 5275 | 267 | 0 | 0.0000 | |
| ckim-dragen | SNP | tv | segdup | hetalt | 93.3333 | 100.0000 | 87.5000 | 97.7716 | 7 | 0 | 7 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | tv | segdup | homalt | 99.9074 | 99.9691 | 99.8458 | 89.2553 | 3237 | 1 | 3237 | 5 | 5 | 100.0000 | |
| ckim-dragen | SNP | * | segdup | * | 98.4991 | 99.8219 | 97.2109 | 92.1838 | 28017 | 50 | 28022 | 804 | 14 | 1.7413 | |
| ckim-dragen | SNP | * | segdup | het | 97.6498 | 99.7863 | 95.6029 | 93.5624 | 17280 | 37 | 17285 | 795 | 5 | 0.6289 | |
| ckim-dragen | SNP | * | segdup | hetalt | 93.3333 | 100.0000 | 87.5000 | 97.7716 | 7 | 0 | 7 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | * | segdup | homalt | 99.9022 | 99.8790 | 99.9255 | 87.7402 | 10730 | 13 | 10730 | 8 | 8 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | segdup | * | 99.1468 | 98.8571 | 99.4382 | 92.6110 | 173 | 2 | 177 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | segdup | het | 99.6255 | 100.0000 | 99.2537 | 92.8034 | 83 | 0 | 133 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | segdup | hetalt | 0.0000 | 97.7778 | 0.0000 | 0.0000 | 44 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | segdup | homalt | 98.9247 | 97.8723 | 100.0000 | 91.9561 | 46 | 1 | 44 | 0 | 0 | ||
| cchapple-custom | SNP | * | segdup | * | 99.5856 | 99.8219 | 99.3504 | 91.8828 | 28017 | 50 | 27988 | 183 | 25 | 13.6612 | |
| cchapple-custom | SNP | * | segdup | het | 99.4246 | 99.7863 | 99.0654 | 93.2744 | 17280 | 37 | 17278 | 163 | 5 | 3.0675 | |
| cchapple-custom | SNP | * | segdup | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | segdup | homalt | 99.8463 | 99.8790 | 99.8136 | 87.7694 | 10730 | 13 | 10710 | 20 | 20 | 100.0000 | |
| cchapple-custom | INDEL | I16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 93.2384 | 19 | 0 | 19 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | segdup | * | 99.3368 | 99.1501 | 99.5243 | 94.3140 | 1050 | 9 | 1046 | 5 | 3 | 60.0000 | |
| cchapple-custom | INDEL | I1_5 | segdup | het | 99.1750 | 98.6989 | 99.6558 | 95.3303 | 531 | 7 | 579 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I1_5 | segdup | hetalt | 0.0000 | 95.8333 | 0.0000 | 0.0000 | 46 | 2 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | segdup | homalt | 99.6798 | 100.0000 | 99.3617 | 92.2211 | 473 | 0 | 467 | 3 | 3 | 100.0000 | |
| cchapple-custom | INDEL | C6_15 | segdup | * | 0.0000 | 0.0000 | 100.0000 | 98.8131 | 0 | 0 | 4 | 0 | 0 | ||
| cchapple-custom | INDEL | C6_15 | segdup | het | 0.0000 | 0.0000 | 100.0000 | 99.2593 | 0 | 0 | 2 | 0 | 0 | ||
| cchapple-custom | INDEL | C6_15 | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C6_15 | segdup | homalt | 0.0000 | 0.0000 | 100.0000 | 97.0149 | 0 | 0 | 2 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | segdup | * | 99.4547 | 99.1840 | 99.7268 | 94.3229 | 1094 | 9 | 1095 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D1_5 | segdup | het | 99.1458 | 98.6994 | 99.5962 | 94.5834 | 683 | 9 | 740 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D1_5 | segdup | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 52 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 93.6878 | 359 | 0 | 355 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | segdup | * | 96.8734 | 95.8115 | 97.9592 | 92.6811 | 183 | 8 | 192 | 4 | 4 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | segdup | het | 98.3425 | 96.7391 | 100.0000 | 93.1979 | 89 | 3 | 144 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | segdup | hetalt | 0.0000 | 89.7959 | 0.0000 | 0.0000 | 44 | 5 | 0 | 0 | 0 | ||