PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51801-51850 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.8449 | 99.8139 | 99.8759 | 69.1925 | 4828 | 9 | 4828 | 6 | 5 | 83.3333 | |
| bgallagher-sentieon | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.8570 | 99.8412 | 99.8729 | 71.3127 | 3143 | 5 | 3143 | 4 | 3 | 75.0000 | |
| bgallagher-sentieon | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.7368 | 1 | 0 | 1 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.8222 | 99.7630 | 99.8814 | 64.1429 | 1684 | 4 | 1684 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 88.8889 | 97.4359 | 0 | 0 | 8 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 83.3333 | 97.9021 | 0 | 0 | 5 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.3846 | 0 | 0 | 3 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.7729 | 99.7421 | 99.8038 | 67.8356 | 9667 | 25 | 9667 | 19 | 15 | 78.9474 | |
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.7675 | 99.7915 | 99.7435 | 70.0911 | 6223 | 13 | 6223 | 16 | 12 | 75.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.6522 | 1 | 0 | 1 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.7826 | 99.6527 | 99.9129 | 62.6693 | 3443 | 12 | 3443 | 3 | 3 | 100.0000 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.1110 | 97.3601 | 98.8735 | 45.3846 | 35626 | 966 | 45291 | 516 | 450 | 87.2093 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.1220 | 97.1827 | 99.0797 | 47.1607 | 15316 | 444 | 34988 | 325 | 263 | 80.9231 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 95.4081 | 0.0000 | 0.0000 | 9994 | 481 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.8869 | 99.6041 | 98.1799 | 38.4191 | 10316 | 41 | 10303 | 191 | 187 | 97.9058 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.1412 | 97.5428 | 98.7469 | 41.4519 | 23937 | 603 | 23956 | 304 | 264 | 86.8421 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.6463 | 98.4049 | 98.8889 | 50.5045 | 10241 | 166 | 10235 | 115 | 88 | 76.5217 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.4617 | 94.1911 | 98.8445 | 26.3329 | 6486 | 400 | 6501 | 76 | 73 | 96.0526 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.9716 | 99.4894 | 98.4590 | 36.7681 | 7210 | 37 | 7220 | 113 | 103 | 91.1504 | |
| asubramanian-gatk | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 85.0806 | 0 | 0 | 0 | 37 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 86.9318 | 0 | 0 | 0 | 23 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 75.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 80.8824 | 0 | 0 | 0 | 13 | 0 | 0.0000 | ||
| astatham-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.2293 | 98.4908 | 99.9790 | 69.4708 | 4764 | 73 | 4764 | 1 | 1 | 100.0000 | |
| astatham-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.9572 | 97.9670 | 99.9676 | 71.7050 | 3084 | 64 | 3084 | 1 | 1 | 100.0000 | |
| astatham-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.7368 | 1 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.7327 | 99.4668 | 100.0000 | 64.1699 | 1679 | 9 | 1679 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.2439 | 97.3027 | 97.1852 | 57.6417 | 35605 | 987 | 38256 | 1108 | 730 | 65.8845 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.4857 | 98.0964 | 96.8826 | 61.5590 | 15460 | 300 | 16751 | 539 | 278 | 51.5770 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.2978 | 94.0048 | 98.7055 | 32.8581 | 9847 | 628 | 10599 | 139 | 132 | 94.9640 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 97.7920 | 99.4303 | 96.2068 | 45.3054 | 10298 | 59 | 10906 | 430 | 320 | 74.4186 | |
| asubramanian-gatk | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 75.5556 | 0 | 0 | 0 | 99 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 74.6622 | 0 | 0 | 0 | 75 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 83.3333 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 77.6699 | 0 | 0 | 0 | 23 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.1461 | 96.8750 | 97.4186 | 69.7659 | 1736 | 56 | 1736 | 46 | 39 | 84.7826 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.0917 | 97.5369 | 94.6886 | 84.1739 | 594 | 15 | 517 | 29 | 25 | 86.2069 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.0756 | 95.4082 | 98.8024 | 34.2002 | 748 | 36 | 825 | 10 | 9 | 90.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.5000 | 98.7469 | 98.2544 | 65.8723 | 394 | 5 | 394 | 7 | 5 | 71.4286 | |
| astatham-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.1605 | 98.5173 | 99.8122 | 66.6528 | 4784 | 72 | 4784 | 9 | 8 | 88.8889 | |
| astatham-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.8731 | 98.0246 | 99.7364 | 69.1784 | 3027 | 61 | 3027 | 8 | 7 | 87.5000 | |
| astatham-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.6522 | 1 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.6595 | 99.3775 | 99.9431 | 60.9816 | 1756 | 11 | 1756 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 69.8046 | 0 | 0 | 0 | 170 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 70.7692 | 0 | 0 | 0 | 114 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 66.6667 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 67.6647 | 0 | 0 | 0 | 54 | 0 | 0.0000 | ||
| astatham-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||