PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5101-5150 / 86044 show all | |||||||||||||||
| ckim-gatk | INDEL | D6_15 | segdup | * | 95.3368 | 96.3351 | 94.3590 | 94.9729 | 184 | 7 | 184 | 11 | 4 | 36.3636 | |
| ckim-gatk | INDEL | D6_15 | segdup | het | 95.2381 | 97.8261 | 92.7835 | 96.4154 | 90 | 2 | 90 | 7 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | segdup | hetalt | 94.6237 | 89.7959 | 100.0000 | 90.4968 | 44 | 5 | 44 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | segdup | homalt | 96.1538 | 100.0000 | 92.5926 | 92.3944 | 50 | 0 | 50 | 4 | 4 | 100.0000 | |
| ckim-gatk | INDEL | I16_PLUS | segdup | * | 97.8723 | 97.8723 | 97.8723 | 96.4635 | 46 | 1 | 46 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | segdup | het | 97.8723 | 95.8333 | 100.0000 | 97.1429 | 23 | 1 | 23 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.1429 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | segdup | homalt | 97.4359 | 100.0000 | 95.0000 | 94.7917 | 19 | 0 | 19 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D1_5 | segdup | * | 98.1263 | 99.5467 | 96.7458 | 96.0214 | 1098 | 5 | 1100 | 37 | 2 | 5.4054 | |
| ckim-gatk | INDEL | D1_5 | segdup | het | 97.3199 | 99.5665 | 95.1724 | 96.5122 | 689 | 3 | 690 | 35 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D1_5 | segdup | hetalt | 98.0392 | 96.1538 | 100.0000 | 95.6336 | 50 | 2 | 51 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | segdup | homalt | 99.7222 | 100.0000 | 99.4460 | 94.5493 | 359 | 0 | 359 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D16_PLUS | segdup | * | 86.7257 | 84.4828 | 89.0909 | 92.1090 | 49 | 9 | 49 | 6 | 3 | 50.0000 | |
| ckim-isaac | INDEL | D16_PLUS | segdup | het | 86.4020 | 89.1892 | 83.7838 | 91.6290 | 33 | 4 | 31 | 6 | 3 | 50.0000 | |
| ckim-isaac | INDEL | D16_PLUS | segdup | hetalt | 61.5385 | 44.4444 | 100.0000 | 95.7746 | 4 | 5 | 6 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 89.3805 | 12 | 0 | 12 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | segdup | * | 98.5851 | 97.9148 | 99.2647 | 92.9825 | 1080 | 23 | 1080 | 8 | 3 | 37.5000 | |
| ckim-isaac | INDEL | D1_5 | segdup | het | 98.8393 | 98.5549 | 99.1254 | 93.5804 | 682 | 10 | 680 | 6 | 2 | 33.3333 | |
| ckim-isaac | INDEL | D1_5 | segdup | hetalt | 96.1154 | 94.2308 | 98.0769 | 93.2026 | 49 | 3 | 51 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | segdup | homalt | 98.4485 | 97.2145 | 99.7143 | 91.3644 | 349 | 10 | 349 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D6_15 | segdup | * | 90.5970 | 85.8639 | 95.8824 | 90.7053 | 164 | 27 | 163 | 7 | 6 | 85.7143 | |
| ckim-isaac | INDEL | D6_15 | segdup | het | 89.7285 | 86.9565 | 92.6829 | 92.5319 | 80 | 12 | 76 | 6 | 6 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | segdup | hetalt | 88.6364 | 79.5918 | 100.0000 | 89.4472 | 39 | 10 | 42 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | segdup | homalt | 93.7500 | 90.0000 | 97.8261 | 86.1862 | 45 | 5 | 45 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | C6_15 | segdup | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C6_15 | segdup | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C6_15 | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C6_15 | segdup | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | SNP | tv | segdup | * | 98.7820 | 99.3671 | 98.2037 | 94.6419 | 8478 | 54 | 8474 | 155 | 6 | 3.8710 | |
| ckim-gatk | SNP | tv | segdup | het | 98.3440 | 99.4704 | 97.2428 | 95.8012 | 5259 | 28 | 5255 | 149 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.3982 | 7 | 0 | 7 | 0 | 0 | ||
| ckim-gatk | SNP | tv | segdup | homalt | 99.5043 | 99.1970 | 99.8135 | 89.9144 | 3212 | 26 | 3212 | 6 | 6 | 100.0000 | |
| ckim-isaac | INDEL | C16_PLUS | segdup | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C16_PLUS | segdup | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C16_PLUS | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C16_PLUS | segdup | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C1_5 | segdup | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C1_5 | segdup | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C1_5 | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C1_5 | segdup | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | * | segdup | * | 96.6725 | 94.9531 | 98.4553 | 92.8290 | 2427 | 129 | 2422 | 38 | 23 | 60.5263 | |
| ckim-isaac | INDEL | * | segdup | het | 97.0051 | 96.3165 | 97.7035 | 93.8034 | 1412 | 54 | 1404 | 33 | 20 | 60.6061 | |
| ckim-isaac | INDEL | * | segdup | hetalt | 89.9263 | 82.3077 | 99.0991 | 92.8479 | 107 | 23 | 110 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | * | segdup | homalt | 97.0085 | 94.5833 | 99.5614 | 90.4632 | 908 | 52 | 908 | 4 | 2 | 50.0000 | |
| ckim-gatk | INDEL | C16_PLUS | segdup | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C16_PLUS | segdup | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C16_PLUS | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C16_PLUS | segdup | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C1_5 | segdup | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C1_5 | segdup | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||