PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51351-51400 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 87.0859 | 79.3103 | 96.5517 | 52.0850 | 483 | 126 | 1176 | 42 | 40 | 95.2381 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 91.8155 | 86.2245 | 98.1818 | 60.1449 | 676 | 108 | 54 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 86.4064 | 90.9774 | 82.2727 | 51.2195 | 363 | 36 | 362 | 78 | 78 | 100.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 94.4932 | 92.6377 | 96.4246 | 45.4241 | 33898 | 2694 | 37756 | 1400 | 1310 | 93.5714 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 95.7841 | 93.1472 | 98.5746 | 46.7673 | 14680 | 1080 | 25103 | 363 | 284 | 78.2369 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 91.3561 | 86.7685 | 96.4558 | 48.1730 | 9089 | 1386 | 2531 | 93 | 92 | 98.9247 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 94.5282 | 97.7986 | 91.4694 | 41.2757 | 10129 | 228 | 10122 | 944 | 934 | 98.9407 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.3637 | 98.3285 | 94.4759 | 62.6464 | 9530 | 162 | 8500 | 497 | 105 | 21.1268 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 95.7234 | 98.5247 | 93.0769 | 67.4612 | 6144 | 92 | 5324 | 396 | 73 | 18.4343 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 73.7598 | 1 | 0 | 201 | 0 | 0 | ||
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 97.3412 | 97.9740 | 96.7165 | 46.4205 | 3385 | 70 | 2975 | 101 | 32 | 31.6832 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.0524 | 98.8880 | 95.2837 | 61.3406 | 4802 | 54 | 4182 | 207 | 43 | 20.7729 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.3685 | 99.0609 | 93.8186 | 66.4004 | 3059 | 29 | 2565 | 169 | 32 | 18.9349 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.9123 | 1 | 0 | 160 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.0184 | 98.5852 | 97.4582 | 45.8333 | 1742 | 25 | 1457 | 38 | 11 | 28.9474 | |
| gduggal-bwafb | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 99.1935 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| gduggal-bwafb | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 99.2366 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwafb | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 98.9011 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwafb | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 95.6571 | 97.7672 | 93.6362 | 64.2950 | 4729 | 108 | 4370 | 297 | 64 | 21.5488 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 95.0505 | 97.9987 | 92.2745 | 68.7494 | 3085 | 63 | 2783 | 233 | 42 | 18.0258 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.8696 | 1 | 0 | 52 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 96.6612 | 97.3341 | 95.9975 | 47.6081 | 1643 | 45 | 1535 | 64 | 22 | 34.3750 | |
| gduggal-bwafb | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 72.5851 | 97.6063 | 57.7747 | 75.1406 | 9460 | 232 | 9679 | 7074 | 284 | 4.0147 | |
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 66.5254 | 97.2739 | 50.5473 | 74.9203 | 6066 | 170 | 6280 | 6144 | 168 | 2.7344 | |
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 1.9417 | 100.0000 | 0.9804 | 62.5000 | 1 | 0 | 1 | 101 | 2 | 1.9802 | |
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 88.4080 | 98.2055 | 80.3880 | 75.9570 | 3393 | 62 | 3398 | 829 | 114 | 13.7515 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 71.1247 | 96.9196 | 56.1741 | 75.2924 | 4688 | 149 | 4854 | 3787 | 159 | 4.1986 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 65.3789 | 96.5057 | 49.4344 | 75.2664 | 3038 | 110 | 3190 | 3263 | 93 | 2.8501 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 2.4691 | 100.0000 | 1.2500 | 60.9756 | 1 | 0 | 1 | 79 | 1 | 1.2658 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 87.2890 | 97.6896 | 78.8899 | 75.7087 | 1649 | 39 | 1663 | 445 | 65 | 14.6067 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 91.8860 | 90.8028 | 92.9954 | 40.2854 | 22283 | 2257 | 23114 | 1741 | 1173 | 67.3751 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 93.4534 | 92.3513 | 94.5822 | 43.0987 | 9611 | 796 | 14228 | 815 | 315 | 38.6503 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 88.5630 | 82.2103 | 95.9796 | 32.1478 | 5661 | 1225 | 1886 | 79 | 51 | 64.5570 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 92.8220 | 96.7435 | 89.2061 | 36.1513 | 7011 | 236 | 7000 | 847 | 807 | 95.2774 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 79.8568 | 84.6127 | 75.6070 | 64.0420 | 4850 | 882 | 3394 | 1095 | 247 | 22.5571 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 73.2002 | 89.9486 | 61.7099 | 71.3186 | 1226 | 137 | 1357 | 842 | 135 | 16.0333 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 86.8622 | 82.8909 | 91.2332 | 40.8368 | 3154 | 651 | 1561 | 150 | 79 | 52.6667 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 82.7682 | 83.3333 | 82.2107 | 69.9221 | 470 | 94 | 476 | 103 | 33 | 32.0388 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 81.2248 | 74.4026 | 89.4244 | 27.1457 | 7037 | 2421 | 7644 | 904 | 893 | 98.7832 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 78.5748 | 67.1057 | 94.7725 | 26.6989 | 1834 | 899 | 5602 | 309 | 300 | 97.0874 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 81.1499 | 74.3504 | 89.3182 | 33.8346 | 3548 | 1224 | 393 | 47 | 47 | 100.0000 | |