PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51051-51100 / 86044 show all | |||||||||||||||
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.3615 | 99.8976 | 96.8719 | 41.6063 | 1951 | 2 | 1951 | 63 | 62 | 98.4127 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 94.7735 | 92.5000 | 97.1616 | 81.7457 | 444 | 36 | 445 | 13 | 12 | 92.3077 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 95.0949 | 93.7500 | 96.4789 | 89.8208 | 150 | 10 | 137 | 5 | 4 | 80.0000 | |
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.7780 | 99.7214 | 99.8347 | 68.2340 | 9665 | 27 | 9665 | 16 | 13 | 81.2500 | |
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.7595 | 99.7595 | 99.7595 | 70.6652 | 6221 | 15 | 6221 | 15 | 12 | 80.0000 | |
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.8333 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.8116 | 99.6527 | 99.9710 | 62.5408 | 3443 | 12 | 3443 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.6306 | 98.1744 | 99.0911 | 41.2071 | 24092 | 448 | 24094 | 221 | 211 | 95.4751 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.3332 | 99.5580 | 99.1095 | 50.6288 | 10361 | 46 | 10350 | 93 | 84 | 90.3226 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.8242 | 94.2928 | 99.4953 | 23.7079 | 6493 | 393 | 6506 | 33 | 33 | 100.0000 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.2867 | 99.8758 | 98.7045 | 36.9692 | 7238 | 9 | 7238 | 95 | 94 | 98.9474 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.5548 | 94.1128 | 99.1270 | 61.5152 | 2270 | 142 | 2271 | 20 | 15 | 75.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.7468 | 98.3607 | 99.1361 | 82.5283 | 480 | 8 | 459 | 4 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 95.9847 | 92.4337 | 99.8195 | 35.5314 | 1637 | 134 | 1659 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 95.9248 | 100.0000 | 92.1687 | 77.1034 | 153 | 0 | 153 | 13 | 12 | 92.3077 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 76.6099 | 94.2733 | 64.5210 | 69.8327 | 4560 | 277 | 4701 | 2585 | 206 | 7.9691 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 71.2738 | 92.2490 | 58.0701 | 68.6719 | 2904 | 244 | 3015 | 2177 | 68 | 3.1236 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 66.6667 | 0 | 1 | 0 | 5 | 2 | 40.0000 | ||
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 88.5602 | 98.1043 | 80.7085 | 72.3823 | 1656 | 32 | 1686 | 403 | 136 | 33.7469 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 19.2271 | 11.7330 | 53.2189 | 75.6912 | 283 | 2129 | 248 | 218 | 182 | 83.4862 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 45.6848 | 32.5820 | 76.4151 | 81.0545 | 159 | 329 | 162 | 50 | 35 | 70.0000 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 2.0892 | 0.0000 | 0.0000 | 37 | 1734 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 42.4438 | 56.8627 | 33.8583 | 68.1704 | 87 | 66 | 86 | 168 | 147 | 87.5000 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.1771 | 97.9914 | 98.3635 | 52.4340 | 35857 | 735 | 35764 | 595 | 553 | 92.9412 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.2504 | 99.2513 | 99.2495 | 62.6333 | 15642 | 118 | 15472 | 117 | 78 | 66.6667 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.9002 | 94.3962 | 99.5408 | 32.4909 | 9888 | 587 | 9971 | 46 | 46 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 97.8109 | 99.7103 | 95.9825 | 45.9159 | 10327 | 30 | 10321 | 432 | 429 | 99.3056 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 44.0541 | 41.4041 | 47.0666 | 44.8610 | 3916 | 5542 | 3939 | 4430 | 3649 | 82.3702 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 66.9020 | 71.8258 | 62.6099 | 52.3713 | 1963 | 770 | 2207 | 1318 | 760 | 57.6631 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 4.4216 | 0.0000 | 0.0000 | 211 | 4561 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 51.0479 | 89.1961 | 35.7556 | 37.7138 | 1742 | 211 | 1732 | 3112 | 2889 | 92.8342 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 18.2169 | 11.6667 | 41.5385 | 87.5836 | 56 | 424 | 54 | 76 | 61 | 80.2632 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 78.8703 | 94.8102 | 67.5188 | 69.4075 | 9189 | 503 | 9350 | 4498 | 362 | 8.0480 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 73.8977 | 92.7678 | 61.4068 | 68.2562 | 5785 | 451 | 5919 | 3720 | 112 | 3.0108 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 65.2174 | 0 | 1 | 0 | 8 | 2 | 25.0000 | ||
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 89.3094 | 98.5239 | 81.6710 | 71.7637 | 3404 | 51 | 3431 | 770 | 248 | 32.2078 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 32.8326 | 22.5000 | 60.7143 | 91.1532 | 36 | 124 | 34 | 22 | 12 | 54.5455 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 279 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 34.7826 | 48.7805 | 27.0270 | 82.1256 | 20 | 21 | 20 | 54 | 49 | 90.7407 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 45.4191 | 32.4145 | 75.8496 | 67.6203 | 1858 | 3874 | 1674 | 533 | 342 | 64.1651 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 83.6651 | 85.4732 | 81.9319 | 70.4517 | 1165 | 198 | 1179 | 260 | 119 | 45.7692 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 5.2037 | 0.0000 | 0.0000 | 198 | 3607 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 74.3243 | 87.7660 | 64.4531 | 60.5344 | 495 | 69 | 495 | 273 | 223 | 81.6850 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 81.1779 | 95.3254 | 70.6870 | 69.0825 | 4629 | 227 | 4671 | 1937 | 164 | 8.4667 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 76.8078 | 93.2966 | 65.2719 | 67.9320 | 2881 | 207 | 2917 | 1552 | 48 | 3.0928 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 65.2174 | 0 | 1 | 0 | 8 | 2 | 25.0000 | ||
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 89.8551 | 98.9247 | 82.3088 | 71.2571 | 1748 | 19 | 1754 | 377 | 114 | 30.2387 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 66.3810 | 65.0448 | 67.7731 | 41.7349 | 15962 | 8578 | 15905 | 7563 | 5364 | 70.9242 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 79.9546 | 88.8056 | 72.7080 | 46.5949 | 9242 | 1165 | 9596 | 3602 | 1710 | 47.4736 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 5.1263 | 0.0000 | 0.0000 | 353 | 6533 | 0 | 0 | 0 | ||