PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5001-5050 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | C16_PLUS | segdup | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | segdup | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | segdup | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C1_5 | segdup | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | C1_5 | segdup | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | C1_5 | segdup | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | C1_5 | segdup | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | C6_15 | segdup | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | segdup | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | segdup | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | * | segdup | * | 94.1537 | 89.4757 | 99.3478 | 96.2604 | 2287 | 269 | 2285 | 15 | 9 | 60.0000 | |
| gduggal-bwaplat | INDEL | * | segdup | het | 93.7455 | 88.9495 | 99.0881 | 97.0073 | 1304 | 162 | 1304 | 12 | 6 | 50.0000 | |
| gduggal-bwaplat | INDEL | * | segdup | hetalt | 85.0838 | 74.6154 | 98.9691 | 96.9725 | 97 | 33 | 96 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | segdup | homalt | 95.8873 | 92.2917 | 99.7745 | 93.8089 | 886 | 74 | 885 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | * | segdup | * | 89.7413 | 89.8670 | 89.6160 | 95.3552 | 2297 | 259 | 2287 | 265 | 217 | 81.8868 | |
| gduggal-bwavard | INDEL | * | segdup | het | 90.5367 | 97.4761 | 84.5196 | 96.2639 | 1429 | 37 | 1425 | 261 | 213 | 81.6092 | |
| gduggal-bwavard | INDEL | * | segdup | hetalt | 0.0000 | 0.7692 | 0.0000 | 0.0000 | 1 | 129 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | segdup | homalt | 94.7011 | 90.3125 | 99.5381 | 91.1777 | 867 | 93 | 862 | 4 | 4 | 100.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | segdup | * | 0.0000 | 0.0000 | 33.3333 | 98.7854 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | segdup | het | 0.0000 | 0.0000 | 99.0654 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| gduggal-bwavard | INDEL | C16_PLUS | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C16_PLUS | segdup | homalt | 0.0000 | 0.0000 | 100.0000 | 96.9697 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | segdup | * | 98.6403 | 98.0243 | 99.2642 | 93.3166 | 19151 | 386 | 19157 | 142 | 9 | 6.3380 | |
| gduggal-bwaplat | SNP | ti | segdup | het | 98.4906 | 98.1463 | 98.8374 | 94.7165 | 11807 | 223 | 11817 | 139 | 6 | 4.3166 | |
| gduggal-bwaplat | SNP | ti | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.1667 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | segdup | homalt | 98.8821 | 97.8281 | 99.9591 | 88.2036 | 7342 | 163 | 7338 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | tv | segdup | * | 98.5186 | 97.8083 | 99.2394 | 94.9737 | 8345 | 187 | 8350 | 64 | 11 | 17.1875 | |
| gduggal-bwaplat | SNP | tv | segdup | het | 98.3560 | 97.8438 | 98.8736 | 96.0991 | 5173 | 114 | 5179 | 59 | 6 | 10.1695 | |
| gduggal-bwaplat | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.1771 | 7 | 0 | 7 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | segdup | homalt | 98.7827 | 97.7455 | 99.8422 | 90.3210 | 3165 | 73 | 3164 | 5 | 5 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | segdup | * | 74.6667 | 59.5745 | 100.0000 | 95.0427 | 28 | 19 | 29 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | segdup | het | 54.5455 | 37.5000 | 100.0000 | 97.3607 | 9 | 15 | 9 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | segdup | hetalt | 85.7143 | 75.0000 | 100.0000 | 97.0000 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | segdup | homalt | 91.4286 | 84.2105 | 100.0000 | 88.1944 | 16 | 3 | 17 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | segdup | * | 90.0543 | 82.8571 | 98.6207 | 95.0257 | 145 | 30 | 143 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | segdup | het | 90.1961 | 83.1325 | 98.5714 | 96.2325 | 69 | 14 | 69 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | segdup | hetalt | 89.1566 | 82.2222 | 97.3684 | 92.6070 | 37 | 8 | 37 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | segdup | homalt | 90.6977 | 82.9787 | 100.0000 | 93.1860 | 39 | 8 | 37 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | segdup | * | 98.6033 | 97.9585 | 99.2566 | 93.9219 | 27494 | 573 | 27505 | 206 | 20 | 9.7087 | |
| gduggal-bwaplat | SNP | * | segdup | het | 98.4496 | 98.0539 | 98.8484 | 95.2313 | 16980 | 337 | 16996 | 198 | 12 | 6.0606 | |
| gduggal-bwaplat | SNP | * | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.1771 | 7 | 0 | 7 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | segdup | homalt | 98.8522 | 97.8032 | 99.9239 | 88.9336 | 10507 | 236 | 10502 | 8 | 8 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | segdup | * | 94.4660 | 90.2738 | 99.0664 | 96.2092 | 956 | 103 | 955 | 9 | 6 | 66.6667 | |
| gduggal-bwaplat | INDEL | I1_5 | segdup | het | 93.3578 | 88.8476 | 98.3505 | 97.1410 | 478 | 60 | 477 | 8 | 5 | 62.5000 | |
| gduggal-bwaplat | INDEL | I1_5 | segdup | hetalt | 85.7143 | 75.0000 | 100.0000 | 97.9821 | 36 | 12 | 36 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | segdup | homalt | 96.5066 | 93.4461 | 99.7743 | 93.3702 | 442 | 31 | 442 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | * | segdup | * | 98.9280 | 99.4656 | 98.3963 | 91.8876 | 27917 | 150 | 27917 | 455 | 30 | 6.5934 | |
| gduggal-bwafb | SNP | * | segdup | het | 98.4151 | 99.3244 | 97.5223 | 92.8812 | 17200 | 117 | 17200 | 437 | 12 | 2.7460 | |