PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49901-49950 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.2467 | 94.3662 | 98.2036 | 32.9317 | 134 | 8 | 164 | 3 | 2 | 66.6667 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 92.7323 | 87.5000 | 98.6301 | 33.6364 | 21 | 3 | 144 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 94.8454 | 0.0000 | 0.0000 | 92 | 5 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 97.5610 | 100.0000 | 95.2381 | 27.5862 | 21 | 0 | 20 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 77.4194 | 75.0000 | 80.0000 | 64.2857 | 3 | 1 | 4 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 66.6667 | 50.0000 | 100.0000 | 66.6667 | 1 | 1 | 4 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 50.0000 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 89.4812 | 86.9565 | 92.1569 | 51.8868 | 40 | 6 | 47 | 4 | 4 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 83.6066 | 75.0000 | 94.4444 | 59.5506 | 6 | 2 | 34 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 84.0000 | 0.0000 | 0.0000 | 21 | 4 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 92.8571 | 100.0000 | 86.6667 | 11.7647 | 13 | 0 | 13 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.1784 | 90.6667 | 95.8333 | 42.4000 | 68 | 7 | 69 | 3 | 2 | 66.6667 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 90.9225 | 84.6154 | 98.2456 | 43.0000 | 11 | 2 | 56 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 89.7959 | 0.0000 | 0.0000 | 44 | 5 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 92.8571 | 100.0000 | 86.6667 | 40.0000 | 13 | 0 | 13 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 91.6667 | 88.0000 | 95.6522 | 52.0833 | 22 | 3 | 22 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 65.6716 | 50.0000 | 95.6522 | 50.0000 | 1 | 1 | 22 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 91.3043 | 0.0000 | 0.0000 | 21 | 2 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.0000 | 92.3077 | 100.0000 | 63.6364 | 12 | 1 | 12 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 61.2903 | 1 | 0 | 12 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 91.6667 | 0.0000 | 0.0000 | 11 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 80.0000 | 66.6667 | 100.0000 | 97.1591 | 6 | 3 | 5 | 0 | 0 | ||
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 83.3333 | 71.4286 | 100.0000 | 97.2973 | 5 | 2 | 4 | 0 | 0 | ||
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 50.0000 | 100.0000 | 96.4286 | 1 | 1 | 1 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 32.1213 | 27.4648 | 38.6792 | 40.1130 | 39 | 103 | 41 | 65 | 65 | 100.0000 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 66.2151 | 70.8333 | 62.1622 | 50.0000 | 17 | 7 | 23 | 14 | 14 | 100.0000 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 4.1237 | 0.0000 | 0.0000 | 4 | 93 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 40.0000 | 85.7143 | 26.0870 | 33.0097 | 18 | 3 | 18 | 51 | 51 | 100.0000 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 8.0000 | 0.0000 | 94.3396 | 2 | 23 | 0 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 50.0000 | 0.0000 | 94.5946 | 1 | 1 | 0 | 2 | 0 | 0.0000 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 4.3478 | 0.0000 | 0.0000 | 1 | 22 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 93.7500 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 7.6923 | 100.0000 | 1 | 12 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 8.3333 | 0.0000 | 0.0000 | 1 | 11 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 31.2655 | 77.7778 | 19.5652 | 86.4307 | 7 | 2 | 9 | 37 | 2 | 5.4054 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 33.1034 | 85.7143 | 20.5128 | 82.6667 | 6 | 1 | 8 | 31 | 1 | 3.2258 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 22.2222 | 50.0000 | 14.2857 | 93.8596 | 1 | 1 | 1 | 6 | 1 | 16.6667 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 0.0000 | 90.9091 | 0 | 4 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 75.0000 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 37.5000 | 75.0000 | 25.0000 | 86.6667 | 6 | 2 | 8 | 24 | 2 | 8.3333 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 39.5480 | 83.3333 | 25.9259 | 83.4356 | 5 | 1 | 7 | 20 | 1 | 5.0000 | |