PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49501-49550 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 67.4157 | 65.2174 | 69.7674 | 63.8655 | 30 | 16 | 30 | 13 | 13 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 44.1176 | 75.0000 | 31.2500 | 71.9298 | 6 | 2 | 5 | 11 | 11 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 61.1111 | 44.0000 | 100.0000 | 45.4545 | 11 | 14 | 12 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 92.8571 | 100.0000 | 86.6667 | 62.5000 | 13 | 0 | 13 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 58.9928 | 54.6667 | 64.0625 | 54.2857 | 41 | 34 | 41 | 23 | 22 | 95.6522 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 56.5217 | 100.0000 | 39.3939 | 54.1667 | 13 | 0 | 13 | 20 | 19 | 95.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 51.5152 | 34.6939 | 100.0000 | 32.0000 | 17 | 32 | 17 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 81.4815 | 84.6154 | 78.5714 | 67.4419 | 11 | 2 | 11 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 60.2317 | 54.9296 | 66.6667 | 46.3303 | 78 | 64 | 78 | 39 | 38 | 97.4359 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 53.6585 | 91.6667 | 37.9310 | 51.2605 | 22 | 2 | 22 | 36 | 36 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 54.1353 | 37.1134 | 100.0000 | 32.0755 | 36 | 61 | 36 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 90.9091 | 95.2381 | 86.9565 | 50.0000 | 20 | 1 | 20 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 33.3333 | 25.0000 | 50.0000 | 80.0000 | 1 | 3 | 1 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 0.0000 | 83.3333 | 0 | 2 | 0 | 1 | 1 | 100.0000 | ||
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 66.6667 | 50.0000 | 100.0000 | 50.0000 | 1 | 1 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 39.0244 | 32.0000 | 50.0000 | 68.0000 | 8 | 17 | 8 | 8 | 7 | 87.5000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 25.0000 | 50.0000 | 16.6667 | 76.9231 | 1 | 1 | 1 | 5 | 5 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 45.1613 | 30.4348 | 87.5000 | 27.2727 | 7 | 16 | 7 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 84.6154 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 94.5946 | 8 | 0 | 8 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 93.0233 | 6 | 0 | 6 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.7742 | 2 | 0 | 2 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.0000 | 96.0000 | 96.0000 | 62.6866 | 24 | 1 | 24 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 80.0000 | 100.0000 | 66.6667 | 90.9091 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.7778 | 95.6522 | 100.0000 | 12.0000 | 22 | 1 | 22 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.2381 | 93.3333 | 97.2222 | 64.3564 | 70 | 5 | 70 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 87.7358 | 13 | 0 | 13 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 94.6237 | 89.7959 | 100.0000 | 25.4237 | 44 | 5 | 44 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 92.8571 | 100.0000 | 86.6667 | 59.4595 | 13 | 0 | 13 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 66.6667 | 50.0000 | 100.0000 | 85.7143 | 2 | 2 | 2 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 2 | 0 | 2 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 95.8525 | 9 | 0 | 9 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 95.1049 | 7 | 0 | 7 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.2973 | 2 | 0 | 2 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 97.5038 | 96.4789 | 98.5507 | 46.5116 | 137 | 5 | 136 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 93.7037 | 95.8333 | 91.6667 | 77.1429 | 23 | 1 | 22 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.8947 | 95.8763 | 100.0000 | 21.1864 | 93 | 4 | 93 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 40.0000 | 21 | 0 | 21 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 91.6667 | 84.6154 | 100.0000 | 71.7949 | 11 | 2 | 11 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||