PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49451-49500 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.1507 | 90.6667 | 95.7746 | 59.6591 | 68 | 7 | 68 | 3 | 2 | 66.6667 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 92.3077 | 92.3077 | 92.3077 | 84.3373 | 12 | 1 | 12 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 93.4783 | 87.7551 | 100.0000 | 25.8621 | 43 | 6 | 43 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 92.8571 | 100.0000 | 86.6667 | 57.1429 | 13 | 0 | 13 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 91.6667 | 84.6154 | 100.0000 | 70.2703 | 11 | 2 | 11 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 90.9091 | 83.3333 | 100.0000 | 56.5217 | 10 | 2 | 10 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 33.3333 | 25.0000 | 50.0000 | 60.0000 | 1 | 3 | 1 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 1 | 0 | 0.0000 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 66.6667 | 50.0000 | 100.0000 | 75.0000 | 1 | 1 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 98.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 97.6744 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 60.5449 | 60.3604 | 60.7306 | 57.8846 | 134 | 88 | 133 | 86 | 83 | 96.5116 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 50.0995 | 86.0000 | 35.3448 | 60.4096 | 43 | 7 | 41 | 75 | 74 | 98.6667 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 54.3418 | 37.6000 | 97.9592 | 37.9747 | 47 | 78 | 48 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 87.1287 | 93.6170 | 81.4815 | 63.5135 | 44 | 3 | 44 | 10 | 8 | 80.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.3333 | 87.5000 | 100.0000 | 93.2584 | 7 | 1 | 6 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 93.6709 | 6 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 50.0000 | 100.0000 | 90.0000 | 1 | 1 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.5517 | 93.3333 | 100.0000 | 56.3636 | 70 | 5 | 72 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 81.9277 | 13 | 0 | 15 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 94.6237 | 89.7959 | 100.0000 | 27.8689 | 44 | 5 | 44 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 38.0952 | 13 | 0 | 13 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 97.8417 | 95.7746 | 100.0000 | 36.3208 | 136 | 6 | 135 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 95.6522 | 91.6667 | 100.0000 | 68.6567 | 22 | 2 | 21 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.8947 | 95.8763 | 100.0000 | 21.1864 | 93 | 4 | 93 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 22.2222 | 21 | 0 | 21 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.1176 | 88.8889 | 100.0000 | 94.9640 | 8 | 1 | 7 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 95.0820 | 7 | 0 | 6 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 50.0000 | 100.0000 | 94.1176 | 1 | 1 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.9574 | 92.0000 | 96.0000 | 57.6271 | 23 | 2 | 24 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 80.0000 | 100.0000 | 66.6667 | 85.0000 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.4545 | 91.3043 | 100.0000 | 37.1429 | 21 | 2 | 22 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||