PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49051-49100 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 82.0755 | 69.6000 | 100.0000 | 36.4964 | 87 | 38 | 87 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 94.3820 | 89.3617 | 100.0000 | 56.7010 | 42 | 5 | 42 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 75.6757 | 60.8696 | 100.0000 | 69.5652 | 28 | 18 | 28 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 66.6667 | 50.0000 | 100.0000 | 91.6667 | 4 | 4 | 4 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 71.7949 | 56.0000 | 100.0000 | 51.7241 | 14 | 11 | 14 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 86.9565 | 76.9231 | 100.0000 | 33.3333 | 10 | 3 | 10 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 85.7143 | 76.0000 | 98.2759 | 73.0233 | 57 | 18 | 57 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 66.6667 | 53.8462 | 87.5000 | 93.7500 | 7 | 6 | 7 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 86.0465 | 75.5102 | 100.0000 | 26.0000 | 37 | 12 | 37 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 64.8649 | 13 | 0 | 13 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 83.2653 | 71.8310 | 99.0291 | 55.4113 | 102 | 40 | 102 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 48.4848 | 33.3333 | 88.8889 | 88.3117 | 8 | 16 | 8 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 87.2093 | 77.3196 | 100.0000 | 33.0357 | 75 | 22 | 75 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 95.0000 | 90.4762 | 100.0000 | 54.7619 | 19 | 2 | 19 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 61.5385 | 44.4444 | 100.0000 | 99.2157 | 4 | 5 | 4 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 60.0000 | 42.8571 | 100.0000 | 99.3088 | 3 | 4 | 3 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 50.0000 | 100.0000 | 98.6842 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 54.5455 | 37.5000 | 100.0000 | 99.2228 | 3 | 5 | 3 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 50.0000 | 33.3333 | 100.0000 | 99.3939 | 2 | 4 | 2 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 50.0000 | 100.0000 | 98.2143 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 78.0488 | 64.0000 | 100.0000 | 72.8814 | 16 | 9 | 16 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 82.0513 | 69.5652 | 100.0000 | 20.0000 | 16 | 7 | 16 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 63.1579 | 46.1538 | 100.0000 | 78.5714 | 6 | 7 | 6 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 58.8235 | 41.6667 | 100.0000 | 61.5385 | 5 | 7 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 99.1935 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 99.0385 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||