PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49001-49050 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 95.7143 | 9 | 0 | 9 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 94.8529 | 7 | 0 | 7 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.2973 | 2 | 0 | 2 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.7110 | 91.4414 | 96.0961 | 45.1400 | 203 | 19 | 320 | 13 | 11 | 84.6154 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 89.0808 | 82.0000 | 97.5000 | 46.5649 | 41 | 9 | 273 | 7 | 5 | 71.4286 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 92.0000 | 0.0000 | 0.0000 | 115 | 10 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 94.0000 | 100.0000 | 88.6792 | 36.1446 | 47 | 0 | 47 | 6 | 6 | 100.0000 | |
| cchapple-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 0.0000 | 50.0000 | 83.3333 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 0.0000 | 50.0000 | 81.8182 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 20.3390 | 100.0000 | 11.3208 | 89.1393 | 8 | 0 | 6 | 47 | 1 | 2.1277 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 17.0213 | 100.0000 | 9.3023 | 88.4409 | 6 | 0 | 4 | 39 | 1 | 2.5641 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 36.3636 | 100.0000 | 22.2222 | 92.1739 | 2 | 0 | 2 | 7 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 47.5921 | 56.0000 | 41.3793 | 69.7917 | 14 | 11 | 12 | 17 | 1 | 5.8824 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 15.3846 | 50.0000 | 9.0909 | 81.0345 | 1 | 1 | 1 | 10 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 67.7725 | 56.5217 | 84.6154 | 31.5789 | 13 | 10 | 11 | 2 | 1 | 50.0000 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 73.6842 | 0 | 0 | 0 | 5 | 0 | 0.0000 | ||
| gduggal-snapfb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 46 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 25 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 13 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 69.8354 | 74.6667 | 65.5914 | 51.8135 | 56 | 19 | 61 | 32 | 10 | 31.2500 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 70.7469 | 84.6154 | 60.7843 | 57.8512 | 11 | 2 | 31 | 20 | 2 | 10.0000 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 77.2179 | 65.3061 | 94.4444 | 25.0000 | 32 | 17 | 17 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 70.2703 | 100.0000 | 54.1667 | 50.0000 | 13 | 0 | 13 | 11 | 7 | 63.6364 | |
| gduggal-snapfb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 10.1449 | 100.0000 | 5.3435 | 81.7294 | 9 | 0 | 7 | 124 | 2 | 1.6129 | |
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 8.5470 | 100.0000 | 4.4643 | 79.8923 | 7 | 0 | 5 | 107 | 2 | 1.8692 | |
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 20.0000 | 100.0000 | 11.1111 | 88.6792 | 2 | 0 | 2 | 16 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 64.3676 | 52.1127 | 84.1584 | 21.7054 | 74 | 68 | 85 | 16 | 16 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 38.8186 | 25.0000 | 86.7925 | 22.0588 | 6 | 18 | 46 | 7 | 7 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 66.7366 | 54.6392 | 85.7143 | 3.4483 | 53 | 44 | 24 | 4 | 4 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 73.1707 | 71.4286 | 75.0000 | 37.5000 | 15 | 6 | 15 | 5 | 5 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 37.5000 | 23.0769 | 100.0000 | 71.4286 | 3 | 10 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 28.5714 | 16.6667 | 100.0000 | 0.0000 | 2 | 10 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 79.8928 | 67.1171 | 98.6755 | 71.9852 | 149 | 73 | 149 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 55.5556 | 40.0000 | 90.9091 | 92.7869 | 20 | 30 | 20 | 2 | 1 | 50.0000 | |