PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
48101-48150 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 94.6117 | 94.0740 | 95.1557 | 42.5447 | 6334 | 399 | 6325 | 322 | 313 | 97.2050 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 94.9292 | 96.3368 | 93.5621 | 42.6632 | 3524 | 134 | 3517 | 242 | 235 | 97.1074 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 86.5177 | 76.8147 | 99.0264 | 30.1942 | 709 | 214 | 712 | 7 | 7 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 97.1297 | 97.6301 | 96.6344 | 45.5436 | 2101 | 51 | 2096 | 73 | 71 | 97.2603 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7441 | 99.6928 | 99.7955 | 25.9231 | 3894 | 12 | 3904 | 8 | 1 | 12.5000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6572 | 99.5964 | 99.7181 | 27.1206 | 2468 | 10 | 2476 | 7 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9300 | 99.9299 | 99.9300 | 23.7460 | 1426 | 1 | 1428 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 92.9577 | 89.1892 | 97.0588 | 68.8073 | 33 | 4 | 33 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 93.3333 | 87.5000 | 100.0000 | 68.4211 | 14 | 2 | 12 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 91.6667 | 84.6154 | 100.0000 | 71.1111 | 11 | 2 | 13 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 94.1176 | 100.0000 | 88.8889 | 65.3846 | 8 | 0 | 8 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7012 | 99.7281 | 99.6744 | 30.0294 | 7335 | 20 | 7346 | 24 | 4 | 16.6667 | |
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6003 | 99.6750 | 99.5257 | 31.5929 | 4601 | 15 | 4616 | 22 | 2 | 9.0909 | |
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8903 | 99.8539 | 99.9268 | 27.2049 | 2734 | 4 | 2730 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.3771 | 99.1429 | 99.6124 | 57.9633 | 1041 | 9 | 1028 | 4 | 1 | 25.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.2454 | 98.9362 | 99.5565 | 60.8846 | 465 | 5 | 449 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.5230 | 99.3610 | 99.6855 | 53.7118 | 311 | 2 | 317 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.4350 | 99.2509 | 99.6198 | 57.2358 | 265 | 2 | 262 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6187 | 99.3868 | 99.8516 | 38.0325 | 4052 | 25 | 4038 | 6 | 2 | 33.3333 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.5386 | 99.2998 | 99.7786 | 39.6095 | 2269 | 16 | 2253 | 5 | 1 | 20.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.3495 | 98.9177 | 99.7849 | 42.8747 | 457 | 5 | 464 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8494 | 99.6992 | 100.0000 | 33.0461 | 1326 | 4 | 1321 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7101 | 99.4220 | 100.0000 | 30.6569 | 1720 | 10 | 1710 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7862 | 99.5733 | 100.0000 | 36.3469 | 700 | 3 | 690 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.5701 | 99.1438 | 100.0000 | 25.7325 | 579 | 5 | 583 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7738 | 99.5485 | 100.0000 | 26.8007 | 441 | 2 | 437 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.2797 | 99.2823 | 99.2771 | 46.2435 | 415 | 3 | 412 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.3223 | 99.1803 | 97.4790 | 53.1496 | 121 | 1 | 116 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.5763 | 99.1561 | 100.0000 | 39.9497 | 235 | 2 | 239 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 52.5000 | 59 | 0 | 57 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 92.1348 | 100.0000 | 85.4167 | 94.0959 | 1 | 0 | 41 | 7 | 6 | 85.7143 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.4359 | 100.0000 | 95.0000 | 93.7695 | 1 | 0 | 19 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 85.7143 | 94.4000 | 0 | 0 | 12 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 0.0000 | 0.0000 | 71.4286 | 94.2149 | 0 | 0 | 10 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 51.7990 | 43.9490 | 63.0631 | 54.1322 | 69 | 88 | 70 | 41 | 41 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 63.3597 | 65.5738 | 61.2903 | 58.1081 | 40 | 21 | 38 | 24 | 24 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 23.8185 | 13.7255 | 90.0000 | 71.4286 | 7 | 44 | 9 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 53.4601 | 48.8889 | 58.9744 | 33.8983 | 22 | 23 | 23 | 16 | 16 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 94.3163 | 93.0341 | 95.6344 | 40.1307 | 3793 | 284 | 4206 | 192 | 187 | 97.3958 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.7842 | 98.0306 | 99.5494 | 36.1496 | 2240 | 45 | 2430 | 11 | 6 | 54.5455 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 65.8938 | 49.7835 | 97.4194 | 62.0098 | 230 | 232 | 302 | 8 | 8 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 94.2215 | 99.4737 | 89.4961 | 39.1577 | 1323 | 7 | 1474 | 173 | 173 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 80.6871 | 76.7630 | 85.0340 | 31.9444 | 1328 | 402 | 1375 | 242 | 240 | 99.1736 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 94.3107 | 93.3144 | 95.3285 | 30.1733 | 656 | 47 | 653 | 32 | 31 | 96.8750 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 60.2778 | 43.6644 | 97.2973 | 41.1531 | 255 | 329 | 288 | 8 | 7 | 87.5000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 79.1206 | 94.1309 | 68.2390 | 28.6996 | 417 | 26 | 434 | 202 | 202 | 100.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 0.0000 | 84.0000 | 89.1775 | 0 | 0 | 21 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 0.0000 | 88.8889 | 88.0000 | 0 | 0 | 8 | 1 | 1 | 100.0000 | |