PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
47901-47950 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.2714 | 98.9362 | 99.6089 | 56.7644 | 465 | 5 | 764 | 3 | 2 | 66.6667 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 98.0831 | 0.0000 | 0.0000 | 307 | 6 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.2452 | 99.2509 | 99.2395 | 60.2118 | 265 | 2 | 261 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 0.0000 | 83.3333 | 92.5000 | 0 | 0 | 10 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 0.0000 | 77.7778 | 92.8571 | 0 | 0 | 7 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 0.0000 | 0.0000 | 100.0000 | 91.1765 | 0 | 0 | 3 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 97.4481 | 96.8153 | 98.0892 | 60.3535 | 152 | 5 | 154 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.8282 | 99.7547 | 99.9018 | 44.3519 | 4067 | 10 | 4070 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.8250 | 99.7812 | 99.8688 | 48.1162 | 2280 | 5 | 2283 | 3 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.3478 | 98.9177 | 99.7817 | 28.1005 | 457 | 5 | 457 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 41.6155 | 1330 | 0 | 1330 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.6667 | 100.0000 | 97.3684 | 80.0000 | 37 | 0 | 37 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.9697 | 100.0000 | 94.1176 | 83.1683 | 16 | 0 | 16 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 67.5000 | 13 | 0 | 13 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 83.6735 | 8 | 0 | 8 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.9445 | 98.1905 | 99.7101 | 62.6893 | 1031 | 19 | 1032 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.4666 | 99.1489 | 99.7863 | 69.8065 | 466 | 4 | 467 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 97.5450 | 95.2077 | 100.0000 | 30.5361 | 298 | 15 | 298 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.6269 | 100.0000 | 99.2565 | 66.1635 | 267 | 0 | 267 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4204 | 99.1329 | 99.7095 | 36.8209 | 1715 | 15 | 1716 | 5 | 4 | 80.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.4310 | 99.4310 | 99.4310 | 47.4196 | 699 | 4 | 699 | 4 | 3 | 75.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.1364 | 98.2877 | 100.0000 | 18.5552 | 574 | 10 | 575 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7743 | 99.7743 | 99.7743 | 34.9486 | 442 | 1 | 442 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5192 | 99.0431 | 100.0000 | 47.9245 | 414 | 4 | 414 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1736 | 98.3607 | 100.0000 | 62.9283 | 120 | 2 | 119 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.5763 | 99.1561 | 100.0000 | 23.6246 | 235 | 2 | 236 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 64.2424 | 59 | 0 | 59 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7211 | 99.6873 | 99.7550 | 36.7324 | 7332 | 23 | 7328 | 18 | 4 | 22.2222 | |
| jmaeng-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6967 | 99.7400 | 99.6534 | 39.6128 | 4604 | 12 | 4600 | 16 | 2 | 12.5000 | |
| jmaeng-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| jmaeng-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7805 | 99.6348 | 99.9267 | 31.1475 | 2728 | 10 | 2728 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7565 | 99.6672 | 99.8461 | 33.6736 | 3893 | 13 | 3892 | 6 | 2 | 33.3333 | |
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7576 | 99.6772 | 99.8383 | 36.6060 | 2470 | 8 | 2469 | 4 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7896 | 99.7197 | 99.8596 | 27.8116 | 1423 | 4 | 1423 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 75.2854 | 64.8571 | 89.7098 | 61.7172 | 681 | 369 | 680 | 78 | 71 | 91.0256 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 91.0964 | 94.2553 | 88.1423 | 65.1755 | 443 | 27 | 446 | 60 | 58 | 96.6667 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 1.2780 | 0.0000 | 0.0000 | 4 | 309 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 90.1734 | 87.6404 | 92.8571 | 52.1822 | 234 | 33 | 234 | 18 | 13 | 72.2222 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 45.1608 | 33.2536 | 70.3518 | 57.5693 | 139 | 279 | 140 | 59 | 58 | 98.3051 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 58.0645 | 48.6486 | 72.0000 | 74.2268 | 18 | 19 | 18 | 7 | 7 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 72.7273 | 75.0000 | 70.5882 | 76.0563 | 12 | 4 | 12 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 13 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 75.0000 | 75.0000 | 75.0000 | 69.2308 | 6 | 2 | 6 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.2985 | 98.8415 | 99.7597 | 44.6403 | 6655 | 78 | 6641 | 16 | 6 | 37.5000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1048 | 98.5238 | 99.6927 | 45.3838 | 3604 | 54 | 3568 | 11 | 2 | 18.1818 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 98.9130 | 98.1582 | 99.6795 | 48.5714 | 906 | 17 | 933 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7905 | 99.6747 | 99.9066 | 41.3311 | 2145 | 7 | 2140 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 75.3120 | 84.4262 | 67.9739 | 56.5341 | 103 | 19 | 104 | 49 | 49 | 100.0000 | |