PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
47751-47800 / 86044 show all | |||||||||||||||
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 97.2393 | 99.5982 | 94.9895 | 38.3851 | 2727 | 11 | 2711 | 143 | 53 | 37.0629 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 25.0000 | 16.2162 | 54.5455 | 77.0833 | 6 | 31 | 6 | 5 | 4 | 80.0000 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 11.1111 | 6.2500 | 50.0000 | 90.4762 | 1 | 15 | 1 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 13 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 58.8235 | 62.5000 | 55.5556 | 66.6667 | 5 | 3 | 5 | 4 | 4 | 100.0000 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 72.6669 | 63.6190 | 84.7150 | 61.4963 | 668 | 382 | 654 | 118 | 77 | 65.2542 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 87.2686 | 88.7234 | 85.8607 | 64.7399 | 417 | 53 | 419 | 69 | 36 | 52.1739 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 3.5144 | 0.0000 | 0.0000 | 11 | 302 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 86.1694 | 89.8876 | 82.7465 | 54.2673 | 240 | 27 | 235 | 49 | 41 | 83.6735 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 26.6490 | 16.9856 | 61.8182 | 56.0000 | 71 | 347 | 68 | 42 | 32 | 76.1905 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 44.9704 | 31.1475 | 80.8511 | 62.9921 | 38 | 84 | 38 | 9 | 6 | 66.6667 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 1.2658 | 0.0000 | 0.0000 | 3 | 234 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 49.1803 | 50.8475 | 47.6190 | 48.7805 | 30 | 29 | 30 | 33 | 26 | 78.7879 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 91.7959 | 97.7681 | 86.5114 | 40.4602 | 3373 | 77 | 3380 | 527 | 26 | 4.9336 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 88.9790 | 96.7259 | 82.3810 | 40.2277 | 2068 | 70 | 2076 | 444 | 4 | 0.9009 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 96.7002 | 99.5423 | 94.0159 | 40.8529 | 1305 | 6 | 1304 | 83 | 22 | 26.5060 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6954 | 99.6733 | 99.7175 | 49.5386 | 6711 | 22 | 6707 | 19 | 12 | 63.1579 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7127 | 99.6993 | 99.7261 | 53.8549 | 3647 | 11 | 3641 | 10 | 3 | 30.0000 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.4570 | 99.1333 | 99.7828 | 28.5493 | 915 | 8 | 919 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7677 | 99.8606 | 99.6750 | 47.8198 | 2149 | 3 | 2147 | 7 | 7 | 100.0000 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 94.7390 | 98.1567 | 91.5513 | 36.9925 | 3834 | 72 | 3836 | 354 | 36 | 10.1695 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 93.1110 | 97.3366 | 89.2370 | 37.3586 | 2412 | 66 | 2421 | 292 | 5 | 1.7123 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 97.6881 | 99.6496 | 95.8023 | 36.3088 | 1422 | 5 | 1415 | 62 | 31 | 50.0000 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 62.9012 | 59.7110 | 66.4516 | 34.9559 | 1033 | 697 | 1030 | 520 | 432 | 83.0769 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 82.5807 | 86.7710 | 78.7765 | 37.6168 | 610 | 93 | 631 | 170 | 95 | 55.8824 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 3.9384 | 0.0000 | 0.0000 | 23 | 561 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 67.0086 | 90.2935 | 53.2710 | 31.8471 | 400 | 43 | 399 | 350 | 337 | 96.2857 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 100.0000 | 100.0000 | 100.0000 | 79.7872 | 37 | 0 | 38 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 100.0000 | 100.0000 | 100.0000 | 84.1584 | 16 | 0 | 16 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 65.8537 | 13 | 0 | 14 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 82.6087 | 8 | 0 | 8 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.0897 | 98.4762 | 99.7110 | 62.4593 | 1034 | 16 | 1035 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.8282 | 99.7547 | 99.9018 | 44.2986 | 4067 | 10 | 4070 | 4 | 1 | 25.0000 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.8250 | 99.7812 | 99.8688 | 48.0455 | 2280 | 5 | 2283 | 3 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.3478 | 98.9177 | 99.7817 | 27.8740 | 457 | 5 | 457 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 41.6411 | 1330 | 0 | 1330 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5945 | 99.3642 | 99.8259 | 36.7938 | 1719 | 11 | 1720 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7151 | 99.5733 | 99.8573 | 47.3724 | 700 | 3 | 700 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.3971 | 98.8014 | 100.0000 | 18.5915 | 577 | 7 | 578 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.6618 | 99.7743 | 99.5495 | 35.0877 | 442 | 1 | 442 | 2 | 2 | 100.0000 | |
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7892 | 99.7825 | 99.7959 | 36.4791 | 7339 | 16 | 7335 | 15 | 5 | 33.3333 | |
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.8159 | 99.9133 | 99.7187 | 39.4602 | 4612 | 4 | 4608 | 13 | 3 | 23.0769 | |
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7622 | 99.5982 | 99.9267 | 30.6657 | 2727 | 11 | 2727 | 2 | 2 | 100.0000 | |
| ckim-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7823 | 99.7440 | 99.8206 | 33.3561 | 3896 | 10 | 3895 | 7 | 3 | 42.8571 | |
| ckim-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.8184 | 99.8386 | 99.7982 | 36.6402 | 2474 | 4 | 2473 | 5 | 1 | 20.0000 | |
| ckim-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||