PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
47401-47450 / 86044 show all | |||||||||||||||
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.3650 | 99.8551 | 98.8796 | 40.1582 | 3445 | 5 | 3442 | 39 | 2 | 5.1282 | |
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.0481 | 99.9065 | 98.2044 | 43.3046 | 2136 | 2 | 2133 | 39 | 2 | 5.1282 | |
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9237 | 99.8474 | 100.0000 | 34.0222 | 1309 | 2 | 1309 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.7261 | 98.7261 | 98.7261 | 62.5298 | 155 | 2 | 155 | 2 | 1 | 50.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.3333 | 100.0000 | 96.7213 | 74.3697 | 61 | 0 | 59 | 2 | 1 | 50.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 98.0000 | 96.0784 | 100.0000 | 23.8806 | 49 | 2 | 51 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 60.5263 | 45 | 0 | 45 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.3028 | 98.7861 | 99.8249 | 33.3463 | 1709 | 21 | 1710 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.7814 | 98.0085 | 99.5665 | 42.6678 | 689 | 14 | 689 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.4836 | 98.9726 | 100.0000 | 18.6798 | 578 | 6 | 579 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8870 | 99.7743 | 100.0000 | 32.1045 | 442 | 1 | 442 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.6667 | 100.0000 | 97.3684 | 76.3975 | 37 | 0 | 37 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.9697 | 100.0000 | 94.1176 | 79.0123 | 16 | 0 | 16 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.2927 | 13 | 0 | 13 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 79.4872 | 8 | 0 | 8 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.2346 | 98.7619 | 99.7118 | 60.6427 | 1037 | 13 | 1038 | 3 | 3 | 100.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.0356 | 98.2979 | 99.7845 | 67.5978 | 462 | 8 | 463 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.3569 | 98.7220 | 100.0000 | 35.2201 | 309 | 4 | 309 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.4393 | 99.6255 | 99.2537 | 63.5870 | 266 | 1 | 266 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6557 | 99.3868 | 99.9261 | 40.5247 | 4052 | 25 | 4055 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.4287 | 98.9934 | 99.8677 | 43.4696 | 2262 | 23 | 2265 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.7831 | 99.5671 | 100.0000 | 29.1217 | 460 | 2 | 460 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 38.4829 | 1330 | 0 | 1330 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6399 | 99.2823 | 100.0000 | 45.1783 | 415 | 3 | 415 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1736 | 98.3607 | 100.0000 | 58.6806 | 120 | 2 | 119 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.7886 | 99.5781 | 100.0000 | 25.0000 | 236 | 1 | 237 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 61.4379 | 59 | 0 | 59 | 0 | 0 | ||
| hfeng-pmm3 | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7001 | 99.4290 | 99.9726 | 32.1925 | 7313 | 42 | 7309 | 2 | 1 | 50.0000 | |
| hfeng-pmm3 | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.5648 | 99.1334 | 100.0000 | 32.4169 | 4576 | 40 | 4572 | 0 | 0 | ||
| hfeng-pmm3 | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9452 | 99.9635 | 99.9270 | 31.7808 | 2737 | 1 | 2737 | 2 | 1 | 50.0000 | |
| hfeng-pmm3 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.8206 | 99.6928 | 99.9487 | 29.2204 | 3894 | 12 | 3893 | 2 | 1 | 50.0000 | |
| hfeng-pmm3 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7776 | 99.5561 | 100.0000 | 29.2802 | 2467 | 11 | 2466 | 0 | 0 | ||
| hfeng-pmm3 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9300 | 100.0000 | 99.8600 | 29.0467 | 1427 | 0 | 1427 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.7179 | 98.0892 | 99.3548 | 70.4198 | 154 | 3 | 154 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.3329 | 98.3607 | 98.3051 | 81.7901 | 60 | 1 | 58 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 98.0000 | 96.0784 | 100.0000 | 26.0870 | 49 | 2 | 51 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 65.6489 | 45 | 0 | 45 | 0 | 0 | ||
| jli-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.8465 | 99.8976 | 99.7954 | 28.9038 | 3902 | 4 | 3903 | 8 | 1 | 12.5000 | |
| jli-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7984 | 99.8789 | 99.7181 | 29.8389 | 2475 | 3 | 2476 | 7 | 0 | 0.0000 | |
| jli-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| jli-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9650 | 100.0000 | 99.9300 | 27.1057 | 1427 | 0 | 1427 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6524 | 99.7101 | 99.5947 | 36.6587 | 3440 | 10 | 3440 | 14 | 2 | 14.2857 | |
| jli-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.5097 | 99.6726 | 99.3473 | 37.7178 | 2131 | 7 | 2131 | 14 | 2 | 14.2857 | |
| jli-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| jli-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9237 | 99.8474 | 100.0000 | 34.7458 | 1309 | 2 | 1309 | 0 | 0 | ||
| jmaeng-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| jmaeng-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||