PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
47001-47050 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 64.3273 | 59.5954 | 69.8756 | 29.2072 | 1031 | 699 | 1067 | 460 | 370 | 80.4348 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 72.4560 | 79.2319 | 66.7478 | 27.2137 | 557 | 146 | 823 | 410 | 336 | 81.9512 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 40.5822 | 0.0000 | 0.0000 | 237 | 347 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 65.0593 | 53.4989 | 82.9932 | 36.5011 | 237 | 206 | 244 | 50 | 34 | 68.0000 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 30.6087 | 21.6216 | 52.3810 | 47.5000 | 8 | 29 | 11 | 10 | 3 | 30.0000 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 10.8696 | 6.2500 | 41.6667 | 53.8462 | 1 | 15 | 5 | 7 | 1 | 14.2857 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 7.6923 | 0.0000 | 0.0000 | 1 | 12 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 70.5882 | 75.0000 | 66.6667 | 35.7143 | 6 | 2 | 6 | 3 | 2 | 66.6667 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 54.9995 | 46.4968 | 67.3077 | 47.2081 | 73 | 84 | 70 | 34 | 26 | 76.4706 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 57.5634 | 52.4590 | 63.7681 | 43.4426 | 32 | 29 | 44 | 25 | 20 | 80.0000 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 25.4902 | 0.0000 | 0.0000 | 13 | 38 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 67.7209 | 62.2222 | 74.2857 | 53.3333 | 28 | 17 | 26 | 9 | 6 | 66.6667 | |
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 81.1375 | 80.9173 | 81.3588 | 37.8886 | 3299 | 778 | 3365 | 771 | 561 | 72.7626 | |
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 83.8258 | 90.7659 | 77.8716 | 35.7639 | 2074 | 211 | 2305 | 655 | 476 | 72.6718 | |
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 40.0433 | 0.0000 | 0.0000 | 185 | 277 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 83.7423 | 78.1955 | 90.1361 | 42.6621 | 1040 | 290 | 1060 | 116 | 85 | 73.2759 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 72.6300 | 71.4689 | 73.8294 | 38.5577 | 4812 | 1921 | 5913 | 2096 | 1645 | 78.4828 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 75.1577 | 77.7747 | 72.7110 | 36.3946 | 2845 | 813 | 4074 | 1529 | 1142 | 74.6893 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 38.7866 | 0.0000 | 0.0000 | 358 | 565 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 75.5916 | 74.7677 | 76.4339 | 43.0667 | 1609 | 543 | 1839 | 567 | 503 | 88.7125 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.1542 | 97.8551 | 98.4553 | 37.1727 | 3376 | 74 | 3378 | 53 | 35 | 66.0377 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.0340 | 96.7727 | 99.3285 | 36.5490 | 2069 | 69 | 2071 | 14 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 1 | 0 | 1 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.3434 | 99.6186 | 97.1004 | 38.0755 | 1306 | 5 | 1306 | 39 | 35 | 89.7436 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.1429 | 97.6886 | 98.6014 | 32.5284 | 7185 | 170 | 7191 | 102 | 76 | 74.5098 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.0092 | 96.5121 | 99.5535 | 31.2615 | 4455 | 161 | 4459 | 20 | 0 | 0.0000 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 1 | 0 | 1 | 0 | 0 | ||
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.3611 | 99.6713 | 97.0850 | 34.4289 | 2729 | 9 | 2731 | 82 | 76 | 92.6829 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.1333 | 97.5422 | 98.7316 | 27.8079 | 3810 | 96 | 3814 | 49 | 41 | 83.6735 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.9878 | 96.2873 | 99.7494 | 25.8824 | 2386 | 92 | 2388 | 6 | 0 | 0.0000 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 1 | 0 | 1 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.3774 | 99.7197 | 97.0708 | 30.6893 | 1423 | 4 | 1425 | 43 | 41 | 95.3488 | |
| ndellapenna-hhga | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 94.6955 | 94.4156 | 94.9771 | 66.7371 | 6357 | 376 | 6429 | 340 | 300 | 88.2353 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 95.3000 | 98.0590 | 92.6920 | 44.9432 | 3587 | 71 | 3729 | 294 | 269 | 91.4966 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 81.2517 | 69.3391 | 98.1067 | 37.6609 | 640 | 283 | 570 | 11 | 10 | 90.9091 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.6796 | 98.9777 | 98.3834 | 43.8974 | 2130 | 22 | 2130 | 35 | 21 | 60.0000 | |
| ndellapenna-hhga | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 88.9515 | 83.7321 | 94.8649 | 49.2455 | 350 | 68 | 351 | 19 | 19 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 88.3886 | 90.9836 | 85.9375 | 59.6215 | 111 | 11 | 110 | 18 | 18 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 86.3984 | 76.3713 | 99.4565 | 26.6932 | 181 | 56 | 183 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.1453 | 98.3051 | 100.0000 | 63.9752 | 58 | 1 | 58 | 0 | 0 | ||
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 0.0000 | 63.8298 | 0 | 0 | 0 | 17 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 0.0000 | 60.0000 | 0 | 0 | 0 | 10 | 0 | 0.0000 | ||