PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
46851-46900 / 86044 show all | |||||||||||||||
| astatham-gatk | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| astatham-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| astatham-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 97.2061 | 97.3623 | 97.0504 | 40.0412 | 3359 | 91 | 3389 | 103 | 49 | 47.5728 | |
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.7565 | 97.0533 | 96.4614 | 41.7715 | 2075 | 63 | 2099 | 77 | 36 | 46.7532 | |
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 97.9824 | 97.9405 | 98.0243 | 36.9430 | 1284 | 27 | 1290 | 26 | 13 | 50.0000 | |
| anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 56.0188 | 50.6667 | 62.6353 | 47.3349 | 532 | 518 | 984 | 587 | 499 | 85.0085 | |
| anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 42.9780 | 30.8511 | 70.8134 | 48.1390 | 145 | 325 | 592 | 244 | 168 | 68.8525 | |
| anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 44.0895 | 0.0000 | 0.0000 | 138 | 175 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 67.8590 | 93.2584 | 53.3333 | 46.3895 | 249 | 18 | 392 | 343 | 331 | 96.5015 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7395 | 99.5954 | 99.8841 | 36.0267 | 1723 | 7 | 1724 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6431 | 99.2888 | 100.0000 | 46.4313 | 698 | 5 | 698 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.8285 | 99.6575 | 100.0000 | 18.3473 | 582 | 2 | 583 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7748 | 100.0000 | 99.5506 | 34.6549 | 443 | 0 | 443 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.0536 | 100.0000 | 98.1250 | 68.1909 | 157 | 0 | 157 | 3 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.4790 | 100.0000 | 95.0820 | 79.2517 | 61 | 0 | 58 | 3 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 22.8571 | 51 | 0 | 54 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 67.6259 | 45 | 0 | 45 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.8650 | 99.8038 | 99.9264 | 43.6688 | 4069 | 8 | 4072 | 3 | 1 | 33.3333 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.8248 | 99.7374 | 99.9124 | 46.8961 | 2279 | 6 | 2282 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.6750 | 99.5671 | 99.7831 | 29.4028 | 460 | 2 | 460 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 41.6667 | 1330 | 0 | 1330 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6188 | 99.5238 | 99.7140 | 62.1846 | 1045 | 5 | 1046 | 3 | 3 | 100.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.5738 | 99.3617 | 99.7868 | 68.6707 | 467 | 3 | 468 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.6795 | 99.3610 | 100.0000 | 35.0731 | 311 | 2 | 311 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.6269 | 100.0000 | 99.2565 | 66.2907 | 267 | 0 | 267 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7602 | 99.5215 | 100.0000 | 47.2081 | 416 | 2 | 416 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1736 | 98.3607 | 100.0000 | 61.2378 | 120 | 2 | 119 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 24.9211 | 237 | 0 | 238 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 64.0244 | 59 | 0 | 59 | 0 | 0 | ||
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4603 | 98.9667 | 99.9588 | 33.4796 | 7279 | 76 | 7275 | 3 | 2 | 66.6667 | |
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.2363 | 98.5269 | 99.9560 | 35.0014 | 4548 | 68 | 4544 | 2 | 1 | 50.0000 | |
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8537 | 99.7443 | 99.9634 | 30.7478 | 2731 | 7 | 2731 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 100.0000 | 100.0000 | 100.0000 | 78.8889 | 37 | 0 | 38 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 100.0000 | 100.0000 | 100.0000 | 82.2222 | 16 | 0 | 16 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 65.8537 | 13 | 0 | 14 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 83.6735 | 8 | 0 | 8 | 0 | 0 | ||
| astatham-gatk | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.3671 | 100.0000 | 98.7421 | 68.1363 | 157 | 0 | 157 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.3051 | 100.0000 | 96.6667 | 79.3814 | 61 | 0 | 58 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 22.8571 | 51 | 0 | 54 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 67.3913 | 45 | 0 | 45 | 0 | 0 | ||