PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
46601-46650 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 0.0000 | 40.0000 | 92.0635 | 0 | 0 | 2 | 3 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 0.0000 | 40.0000 | 91.2281 | 0 | 0 | 2 | 3 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 77.5159 | 76.4592 | 78.6021 | 48.9675 | 5148 | 1585 | 5128 | 1396 | 1280 | 91.6905 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 83.0702 | 98.1137 | 72.0266 | 52.1291 | 3589 | 69 | 3579 | 1390 | 1276 | 91.7986 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.4334 | 0.0000 | 0.0000 | 4 | 919 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 83.7592 | 72.2584 | 99.6141 | 35.3161 | 1555 | 597 | 1549 | 6 | 4 | 66.6667 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 81.6911 | 69.4493 | 99.1722 | 56.0007 | 2396 | 1054 | 2396 | 20 | 5 | 25.0000 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 81.1243 | 68.8494 | 98.7257 | 59.8978 | 1472 | 666 | 1472 | 19 | 4 | 21.0526 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 82.6476 | 70.4805 | 99.8919 | 47.7991 | 924 | 387 | 924 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 57.6923 | 40.5405 | 100.0000 | 85.4369 | 15 | 22 | 15 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 31.5789 | 18.7500 | 100.0000 | 94.2308 | 3 | 13 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 70.0000 | 53.8462 | 100.0000 | 75.0000 | 7 | 6 | 7 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 76.9231 | 62.5000 | 100.0000 | 78.2609 | 5 | 3 | 5 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 96.3342 | 95.5238 | 97.1585 | 61.3924 | 1003 | 47 | 889 | 26 | 23 | 88.4615 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.7462 | 97.6596 | 95.8498 | 63.4393 | 459 | 11 | 485 | 21 | 18 | 85.7143 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 96.3083 | 94.5687 | 98.1132 | 46.8227 | 296 | 17 | 156 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 95.9381 | 92.8839 | 99.2000 | 63.6099 | 248 | 19 | 248 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 97.5847 | 95.9538 | 99.2721 | 31.4921 | 1660 | 70 | 1773 | 13 | 12 | 92.3077 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.3560 | 93.3144 | 99.6025 | 30.4588 | 656 | 47 | 1253 | 5 | 4 | 80.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 96.4583 | 96.5753 | 96.3415 | 31.6667 | 564 | 20 | 79 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.1004 | 99.3228 | 98.8789 | 34.2183 | 440 | 3 | 441 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 61.4334 | 48.6486 | 83.3333 | 60.0000 | 18 | 19 | 15 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 38.8889 | 25.0000 | 87.5000 | 66.6667 | 4 | 12 | 7 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 51.8519 | 53.8462 | 50.0000 | 71.4286 | 7 | 6 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 87.5000 | 87.5000 | 87.5000 | 42.8571 | 7 | 1 | 7 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4445 | 99.7009 | 99.1894 | 39.5064 | 7333 | 22 | 7342 | 60 | 10 | 16.6667 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.2360 | 99.6967 | 98.7794 | 42.1600 | 4602 | 14 | 4613 | 57 | 9 | 15.7895 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7989 | 99.7078 | 99.8902 | 34.3036 | 2730 | 8 | 2728 | 3 | 1 | 33.3333 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.3744 | 99.5648 | 99.1847 | 37.2000 | 3889 | 17 | 3893 | 32 | 7 | 21.8750 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1968 | 99.5561 | 98.8400 | 40.7302 | 2467 | 11 | 2471 | 29 | 6 | 20.6897 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.6843 | 99.5795 | 99.7893 | 29.7830 | 1421 | 6 | 1421 | 3 | 1 | 33.3333 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5239 | 99.8551 | 99.1949 | 41.9366 | 3445 | 5 | 3450 | 28 | 3 | 10.7143 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.2813 | 99.8597 | 98.7097 | 43.7241 | 2135 | 3 | 2142 | 28 | 3 | 10.7143 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9237 | 99.8474 | 100.0000 | 38.6097 | 1309 | 2 | 1307 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 88.0281 | 84.4498 | 91.9231 | 48.1038 | 353 | 65 | 239 | 21 | 21 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 81.1142 | 74.5902 | 88.8889 | 51.3514 | 91 | 31 | 128 | 16 | 16 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 92.9425 | 91.5612 | 94.3662 | 39.3162 | 217 | 20 | 67 | 4 | 4 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 85.6957 | 76.2712 | 97.7778 | 48.8636 | 45 | 14 | 44 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.7659 | 98.1114 | 99.4293 | 42.4615 | 4000 | 77 | 4007 | 23 | 16 | 69.5652 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.5655 | 97.5492 | 99.6032 | 43.6746 | 2229 | 56 | 2510 | 10 | 3 | 30.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 97.6832 | 96.5368 | 98.8571 | 39.8625 | 446 | 16 | 173 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.3995 | 99.6241 | 99.1760 | 40.3752 | 1325 | 5 | 1324 | 11 | 11 | 100.0000 | |
| gduggal-bwaplat | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||