PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
46551-46600 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 91.9813 | 85.4583 | 99.5823 | 47.6985 | 3338 | 568 | 3338 | 14 | 1 | 7.1429 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 91.2939 | 84.4229 | 99.3824 | 53.3363 | 2092 | 386 | 2092 | 13 | 1 | 7.6923 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 93.1937 | 87.3160 | 99.9198 | 34.2646 | 1246 | 181 | 1246 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 68.7772 | 52.7619 | 98.7522 | 77.3150 | 554 | 496 | 554 | 7 | 2 | 28.5714 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 53.9291 | 37.2340 | 97.7654 | 86.7506 | 175 | 295 | 175 | 4 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 88.6525 | 79.8722 | 99.6016 | 46.2527 | 250 | 63 | 250 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 64.8241 | 48.3146 | 98.4733 | 80.0000 | 129 | 138 | 129 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 73.8416 | 59.0909 | 98.4064 | 66.3539 | 247 | 171 | 247 | 4 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 47.2727 | 31.9672 | 90.6977 | 87.2024 | 39 | 83 | 39 | 4 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 88.7324 | 79.7468 | 100.0000 | 33.2155 | 189 | 48 | 189 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 48.7179 | 32.2034 | 100.0000 | 85.0394 | 19 | 40 | 19 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 87.3886 | 77.9606 | 99.4105 | 51.5253 | 5734 | 1621 | 5734 | 34 | 6 | 17.6471 | |
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 86.7998 | 77.2097 | 99.1101 | 56.3009 | 3564 | 1052 | 3564 | 32 | 5 | 15.6250 | |
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 88.3910 | 79.2549 | 99.9079 | 40.8013 | 2170 | 568 | 2170 | 2 | 1 | 50.0000 | |