PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4551-4600 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 75.0000 | 4 | 1 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | func_cds | homalt | 99.7783 | 99.5575 | 100.0000 | 30.7692 | 225 | 1 | 225 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C16_PLUS | func_cds | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C16_PLUS | func_cds | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ltrigg-rtg1 | INDEL | C16_PLUS | func_cds | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C1_5 | func_cds | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C1_5 | func_cds | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C1_5 | func_cds | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C1_5 | func_cds | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | SNP | tv | func_cds | * | 98.8262 | 99.1993 | 98.4559 | 36.2571 | 4336 | 35 | 4336 | 68 | 5 | 7.3529 | |
| jpowers-varprowl | SNP | tv | func_cds | het | 98.3558 | 99.0591 | 97.6623 | 39.9644 | 2632 | 25 | 2632 | 63 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | tv | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 10 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | tv | func_cds | homalt | 99.8535 | 100.0000 | 99.7074 | 29.3802 | 1704 | 0 | 1704 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | func_cds | * | 94.9438 | 93.8889 | 96.0227 | 35.7664 | 169 | 11 | 169 | 7 | 7 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | func_cds | het | 91.6667 | 93.2203 | 90.1639 | 47.4138 | 55 | 4 | 55 | 6 | 6 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I1_5 | func_cds | homalt | 97.4359 | 95.7983 | 99.1304 | 27.2152 | 114 | 5 | 114 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | SNP | * | func_cds | * | 99.3809 | 99.4931 | 99.2689 | 29.1793 | 18058 | 92 | 18058 | 133 | 14 | 10.5263 | |
| jpowers-varprowl | SNP | * | func_cds | het | 99.1057 | 99.2922 | 98.9199 | 32.1729 | 11082 | 79 | 11082 | 121 | 2 | 1.6529 | |
| jpowers-varprowl | SNP | * | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 10 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | func_cds | homalt | 99.8926 | 99.9570 | 99.8283 | 23.7867 | 6976 | 3 | 6976 | 12 | 12 | 100.0000 | |
| jpowers-varprowl | SNP | ti | func_cds | * | 99.5285 | 99.5285 | 99.5285 | 26.5751 | 13722 | 65 | 13722 | 65 | 9 | 13.8462 | |
| jpowers-varprowl | SNP | ti | func_cds | het | 99.3416 | 99.3650 | 99.3183 | 29.2650 | 8450 | 54 | 8450 | 58 | 2 | 3.4483 | |
| jpowers-varprowl | SNP | ti | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | ti | func_cds | homalt | 99.9052 | 99.9431 | 99.8674 | 21.7810 | 5272 | 3 | 5272 | 7 | 7 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | func_cds | * | 81.4815 | 76.7442 | 86.8421 | 33.3333 | 33 | 10 | 33 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | func_cds | het | 84.0000 | 87.5000 | 80.7692 | 33.3333 | 21 | 3 | 21 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I6_15 | func_cds | homalt | 88.8889 | 80.0000 | 100.0000 | 33.3333 | 12 | 3 | 12 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 25.9259 | 180 | 0 | 180 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 21.3333 | 59 | 0 | 59 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 25.6250 | 119 | 0 | 119 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | func_cds | * | 98.8235 | 97.6744 | 100.0000 | 31.1475 | 42 | 1 | 42 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 32.3529 | 24 | 0 | 23 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 42.8571 | 3 | 1 | 4 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 25.0000 | 15 | 0 | 15 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | func_cds | * | 99.6647 | 99.8898 | 99.4405 | 22.8252 | 18130 | 20 | 18129 | 102 | 1 | 0.9804 | |
| ltrigg-rtg1 | SNP | * | func_cds | het | 99.4644 | 99.8387 | 99.0928 | 23.2229 | 11143 | 18 | 11142 | 102 | 1 | 0.9804 | |
| ltrigg-rtg1 | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 58.3333 | 10 | 0 | 10 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | func_cds | homalt | 99.9857 | 99.9713 | 100.0000 | 22.0795 | 6977 | 2 | 6977 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | func_cds | * | 90.9091 | 83.3333 | 100.0000 | 50.0000 | 10 | 2 | 10 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | func_cds | het | 94.1176 | 88.8889 | 100.0000 | 42.8571 | 8 | 1 | 8 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ltrigg-rtg1 | INDEL | I16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C6_15 | func_cds | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C6_15 | func_cds | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C6_15 | func_cds | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C6_15 | func_cds | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||