PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4501-4550 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | SNP | ti | func_cds | * | 99.7465 | 99.8912 | 99.6022 | 21.3270 | 13772 | 15 | 13771 | 55 | 1 | 1.8182 | |
| ltrigg-rtg1 | SNP | ti | func_cds | het | 99.6011 | 99.8471 | 99.3563 | 21.6630 | 8491 | 13 | 8490 | 55 | 1 | 1.8182 | |
| ltrigg-rtg1 | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 46.6667 | 8 | 0 | 8 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | func_cds | homalt | 99.9810 | 99.9621 | 100.0000 | 20.7187 | 5273 | 2 | 5273 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | func_cds | * | 99.3248 | 99.1011 | 99.5495 | 36.5714 | 441 | 4 | 442 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | func_cds | het | 99.0654 | 99.0654 | 99.0654 | 38.1503 | 212 | 2 | 212 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 75.0000 | 4 | 1 | 5 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | func_cds | homalt | 99.7783 | 99.5575 | 100.0000 | 29.6875 | 225 | 1 | 225 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | func_cds | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | func_cds | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ltrigg-rtg2 | INDEL | C16_PLUS | func_cds | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | SNP | tv | func_cds | * | 99.4080 | 99.8856 | 98.9350 | 27.2263 | 4366 | 5 | 4366 | 47 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | tv | func_cds | het | 99.0291 | 99.8118 | 98.2586 | 27.7763 | 2652 | 5 | 2652 | 47 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 58.3333 | 10 | 0 | 10 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 26.0096 | 1704 | 0 | 1704 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | func_cds | * | 99.5302 | 99.8912 | 99.1718 | 29.3312 | 13772 | 15 | 13770 | 115 | 1 | 0.8696 | |
| jmaeng-gatk | SNP | ti | func_cds | het | 99.2988 | 99.9412 | 98.6647 | 33.9419 | 8499 | 5 | 8497 | 115 | 1 | 0.8696 | |
| jmaeng-gatk | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 61.9048 | 8 | 0 | 8 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | func_cds | homalt | 99.9051 | 99.8104 | 100.0000 | 20.1062 | 5265 | 10 | 5265 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | func_cds | * | 99.2038 | 99.7941 | 98.6205 | 39.0741 | 4362 | 9 | 4361 | 61 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | tv | func_cds | het | 98.8082 | 99.8871 | 97.7524 | 44.9828 | 2654 | 3 | 2653 | 61 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.2857 | 10 | 0 | 10 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | func_cds | homalt | 99.8236 | 99.6479 | 100.0000 | 26.0775 | 1698 | 6 | 1698 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | func_cds | * | 99.4513 | 99.8678 | 99.0382 | 31.9360 | 18126 | 24 | 18123 | 176 | 1 | 0.5682 | |
| jmaeng-gatk | SNP | * | func_cds | het | 99.1816 | 99.9283 | 98.4461 | 36.9727 | 11153 | 8 | 11150 | 176 | 1 | 0.5682 | |
| jmaeng-gatk | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.2857 | 10 | 0 | 10 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | func_cds | homalt | 99.8852 | 99.7707 | 100.0000 | 21.6496 | 6963 | 16 | 6963 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | func_cds | * | 97.8593 | 100.0000 | 95.8084 | 53.8674 | 159 | 0 | 160 | 7 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D1_5 | func_cds | het | 96.0894 | 100.0000 | 92.4731 | 62.6506 | 85 | 0 | 86 | 7 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D1_5 | func_cds | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | D1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 33.9286 | 74 | 0 | 74 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | func_cds | * | 95.6522 | 91.6667 | 100.0000 | 77.5510 | 11 | 1 | 11 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 70.0000 | 9 | 0 | 9 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | func_cds | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | I16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 88.2353 | 2 | 0 | 2 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | func_cds | * | 97.5741 | 100.0000 | 95.2632 | 47.8022 | 180 | 0 | 181 | 9 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | func_cds | het | 93.0233 | 100.0000 | 86.9565 | 63.4921 | 59 | 0 | 60 | 9 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 2 | 0 | 2 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 31.2139 | 119 | 0 | 119 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | func_cds | * | 97.6744 | 97.6744 | 97.6744 | 41.8919 | 42 | 1 | 42 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I6_15 | func_cds | het | 97.9592 | 100.0000 | 96.0000 | 44.4444 | 24 | 0 | 24 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 0.0000 | 3 | 1 | 3 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 42.3077 | 15 | 0 | 15 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 57.0000 | 43 | 0 | 43 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 56.0606 | 29 | 0 | 29 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 2 | 0 | 2 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 58.6207 | 12 | 0 | 12 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | func_cds | * | 99.3231 | 98.8764 | 99.7738 | 35.4745 | 440 | 5 | 441 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | func_cds | het | 99.0610 | 98.5981 | 99.5283 | 36.1446 | 211 | 3 | 211 | 1 | 0 | 0.0000 | |