PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
44001-44050 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 83.5594 | 82.2599 | 84.9006 | 82.0181 | 2184 | 471 | 2221 | 395 | 339 | 85.8228 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 81.2926 | 90.9091 | 73.5160 | 70.9163 | 880 | 88 | 966 | 348 | 303 | 87.0690 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 81.6253 | 69.8745 | 98.1273 | 41.9144 | 835 | 360 | 786 | 15 | 11 | 73.3333 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 94.4612 | 95.3252 | 93.6128 | 55.7029 | 469 | 23 | 469 | 32 | 25 | 78.1250 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 67.4699 | 66.6667 | 68.2927 | 90.5747 | 28 | 14 | 28 | 13 | 12 | 92.3077 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 74.6313 | 61.1111 | 95.8333 | 91.7241 | 22 | 14 | 23 | 1 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 45.4545 | 100.0000 | 29.4118 | 88.2759 | 6 | 0 | 5 | 12 | 12 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 46.2359 | 35.4839 | 66.3366 | 79.0456 | 66 | 120 | 67 | 34 | 34 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 52.8416 | 65.7143 | 44.1860 | 84.1912 | 23 | 12 | 19 | 24 | 24 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 43.9242 | 28.4768 | 96.0000 | 65.0350 | 43 | 108 | 48 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 88.0597 | 0 | 0 | 0 | 8 | 8 | 100.0000 | ||
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 75.1220 | 76.2376 | 74.0385 | 94.4710 | 77 | 24 | 77 | 27 | 17 | 62.9630 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 74.0343 | 69.6970 | 78.9474 | 95.0607 | 46 | 20 | 45 | 12 | 3 | 25.0000 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 76.9887 | 88.5714 | 68.0851 | 93.5351 | 31 | 4 | 32 | 15 | 14 | 93.3333 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.9354 | 94.1445 | 95.7397 | 51.4296 | 1238 | 77 | 1236 | 55 | 43 | 78.1818 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 91.5617 | 96.6667 | 86.9688 | 73.4387 | 319 | 11 | 307 | 46 | 35 | 76.0870 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 95.4239 | 91.9294 | 99.1946 | 24.7475 | 729 | 64 | 739 | 6 | 6 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.7013 | 98.9583 | 98.4456 | 43.0678 | 190 | 2 | 190 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.6190 | 97.6190 | 97.6190 | 89.3401 | 41 | 1 | 41 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 98.5915 | 97.2222 | 100.0000 | 88.5621 | 35 | 1 | 35 | 0 | 0 | ||
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 92.3077 | 100.0000 | 85.7143 | 92.0455 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 91.5452 | 84.4086 | 100.0000 | 70.6542 | 157 | 29 | 157 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 83.3333 | 71.4286 | 100.0000 | 91.2698 | 25 | 10 | 22 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 93.2862 | 87.4172 | 100.0000 | 47.6744 | 132 | 19 | 135 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 92.7288 | 90.2597 | 95.3368 | 64.7810 | 556 | 60 | 552 | 27 | 25 | 92.5926 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 88.2174 | 92.0732 | 84.6715 | 84.6413 | 151 | 13 | 116 | 21 | 19 | 90.4762 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 93.4570 | 88.8571 | 98.5591 | 32.4903 | 311 | 39 | 342 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 95.4315 | 92.1569 | 98.9474 | 60.0840 | 94 | 8 | 94 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.3240 | 95.7792 | 96.8750 | 60.5835 | 1180 | 52 | 1178 | 38 | 26 | 68.4211 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.5589 | 96.3636 | 92.8205 | 77.9037 | 371 | 14 | 362 | 28 | 18 | 64.2857 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.8547 | 94.6154 | 99.2026 | 23.5366 | 615 | 35 | 622 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.9798 | 98.4772 | 97.4874 | 60.2000 | 194 | 3 | 194 | 5 | 3 | 60.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.1404 | 95.8042 | 96.4789 | 92.5654 | 137 | 6 | 137 | 5 | 4 | 80.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.0297 | 94.1176 | 95.9596 | 92.6174 | 96 | 6 | 95 | 4 | 3 | 75.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.8235 | 100.0000 | 97.6744 | 92.4429 | 41 | 0 | 42 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.5224 | 95.0495 | 96.0000 | 93.4037 | 96 | 5 | 96 | 4 | 3 | 75.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 93.0824 | 92.4242 | 93.7500 | 93.8164 | 61 | 5 | 60 | 4 | 3 | 75.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 92.5156 | 35 | 0 | 36 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 90.9511 | 85.8736 | 96.6667 | 77.4436 | 231 | 38 | 232 | 8 | 5 | 62.5000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 82.4497 | 80.3922 | 84.6154 | 93.4233 | 41 | 10 | 33 | 6 | 3 | 50.0000 | |