PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43851-43900 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 50.0731 | 34.1014 | 94.1860 | 56.1224 | 74 | 143 | 81 | 5 | 5 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 16.6667 | 100.0000 | 9.0909 | 90.8333 | 1 | 0 | 1 | 10 | 9 | 90.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 68.8811 | 63.9610 | 74.6212 | 70.9571 | 394 | 222 | 394 | 134 | 130 | 97.0149 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 62.0349 | 81.0976 | 50.2283 | 77.7439 | 133 | 31 | 110 | 109 | 107 | 98.1651 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 64.1239 | 47.4286 | 98.9583 | 48.3871 | 166 | 184 | 190 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 86.2677 | 93.1373 | 80.3419 | 74.6753 | 95 | 7 | 94 | 23 | 22 | 95.6522 | |
| mlin-fermikit | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 86.8064 | 78.5714 | 96.9697 | 88.5813 | 33 | 9 | 32 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 86.1538 | 77.7778 | 96.5517 | 86.0577 | 28 | 8 | 28 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 90.9091 | 83.3333 | 100.0000 | 95.0617 | 5 | 1 | 4 | 0 | 0 | ||
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 83.9455 | 85.0094 | 82.9080 | 59.5221 | 2257 | 398 | 3216 | 663 | 302 | 45.5505 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 85.6204 | 89.4628 | 82.0945 | 59.1015 | 866 | 102 | 2728 | 595 | 253 | 42.5210 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 86.2527 | 79.1632 | 94.7368 | 71.2121 | 946 | 249 | 18 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 88.9612 | 90.4472 | 87.5233 | 61.4224 | 445 | 47 | 470 | 67 | 49 | 73.1343 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 80.4044 | 84.5779 | 76.6234 | 63.7476 | 521 | 95 | 590 | 180 | 64 | 35.5556 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 83.1167 | 92.6829 | 75.3404 | 62.6343 | 152 | 12 | 498 | 163 | 50 | 30.6748 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 79.1429 | 0.0000 | 0.0000 | 277 | 73 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 87.2038 | 90.1961 | 84.4037 | 69.2958 | 92 | 10 | 92 | 17 | 14 | 82.3529 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 94.6429 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 96.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 93.5484 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 79.0492 | 67.3267 | 95.7143 | 92.4812 | 68 | 33 | 67 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 75.6258 | 63.6364 | 93.1818 | 93.3131 | 42 | 24 | 41 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 85.2459 | 74.2857 | 100.0000 | 90.4762 | 26 | 9 | 26 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 87.2924 | 84.6591 | 90.0947 | 59.0476 | 1043 | 189 | 1046 | 115 | 86 | 74.7826 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 89.2573 | 89.3506 | 89.1641 | 59.4561 | 344 | 41 | 864 | 105 | 76 | 72.3810 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 80.1538 | 100.0000 | 521 | 129 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 92.5203 | 90.3553 | 94.7917 | 56.5611 | 178 | 19 | 182 | 10 | 10 | 100.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 87.1595 | 78.3217 | 98.2456 | 92.8750 | 112 | 31 | 112 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 83.4286 | 71.5686 | 100.0000 | 93.4470 | 73 | 29 | 73 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 95.1220 | 95.1220 | 95.1220 | 91.5638 | 39 | 2 | 39 | 2 | 1 | 50.0000 | |