PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4251-4300 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | I16_PLUS | func_cds | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | INDEL | I16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | func_cds | * | 98.8235 | 97.6744 | 100.0000 | 38.2353 | 42 | 1 | 42 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 38.4615 | 24 | 0 | 24 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 25.0000 | 3 | 1 | 3 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 40.0000 | 15 | 0 | 15 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | func_cds | * | 99.9366 | 99.9614 | 99.9119 | 23.2953 | 18143 | 7 | 18140 | 16 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | * | func_cds | het | 99.9015 | 99.9462 | 99.8567 | 23.9755 | 11155 | 6 | 11152 | 16 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 62.9630 | 10 | 0 | 10 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | func_cds | homalt | 99.9928 | 99.9857 | 100.0000 | 22.0596 | 6978 | 1 | 6978 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | func_cds | * | 99.9384 | 99.9637 | 99.9130 | 21.7209 | 13782 | 5 | 13780 | 12 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | func_cds | het | 99.9060 | 99.9530 | 99.8590 | 22.2902 | 8500 | 4 | 8498 | 12 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 52.9412 | 8 | 0 | 8 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | func_cds | homalt | 99.9905 | 99.9810 | 100.0000 | 20.7037 | 5274 | 1 | 5274 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | func_cds | * | 99.7214 | 99.4444 | 100.0000 | 35.2518 | 179 | 1 | 180 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | func_cds | het | 99.1453 | 98.3051 | 100.0000 | 42.7184 | 58 | 1 | 59 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 33.3333 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 30.8140 | 119 | 0 | 119 | 0 | 0 | ||
| ghariani-varprowl | SNP | * | func_cds | * | 99.5441 | 99.8512 | 99.2389 | 30.8362 | 18123 | 27 | 18123 | 139 | 14 | 10.0719 | |
| ghariani-varprowl | SNP | * | func_cds | het | 99.3937 | 99.8746 | 98.9174 | 34.8349 | 11147 | 14 | 11147 | 122 | 2 | 1.6393 | |
| ghariani-varprowl | SNP | * | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 10 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | func_cds | homalt | 99.8569 | 99.9570 | 99.7569 | 23.2466 | 6976 | 3 | 6976 | 17 | 12 | 70.5882 | |
| ghariani-varprowl | SNP | ti | func_cds | * | 99.6201 | 99.8549 | 99.3864 | 28.0976 | 13767 | 20 | 13767 | 85 | 9 | 10.5882 | |
| ghariani-varprowl | SNP | ti | func_cds | het | 99.5080 | 99.8942 | 99.1249 | 31.7349 | 8495 | 9 | 8495 | 75 | 2 | 2.6667 | |
| ghariani-varprowl | SNP | ti | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | func_cds | homalt | 99.8769 | 99.9431 | 99.8107 | 21.2934 | 5272 | 3 | 5272 | 10 | 7 | 70.0000 | |
| ghariani-varprowl | INDEL | I6_15 | func_cds | * | 83.7209 | 83.7209 | 83.7209 | 37.6812 | 36 | 7 | 36 | 7 | 7 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | func_cds | het | 87.2727 | 100.0000 | 77.4194 | 39.2157 | 24 | 0 | 24 | 7 | 7 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I6_15 | func_cds | homalt | 88.8889 | 80.0000 | 100.0000 | 33.3333 | 12 | 3 | 12 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | func_cds | * | 91.6923 | 93.7107 | 89.7590 | 41.3428 | 149 | 10 | 149 | 17 | 10 | 58.8235 | |
| ghariani-varprowl | INDEL | D1_5 | func_cds | het | 91.3978 | 100.0000 | 84.1584 | 48.7310 | 85 | 0 | 85 | 16 | 10 | 62.5000 | |
| ghariani-varprowl | INDEL | D1_5 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D1_5 | func_cds | homalt | 92.0863 | 86.4865 | 98.4615 | 24.4186 | 64 | 10 | 64 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | func_cds | * | 81.8182 | 75.0000 | 90.0000 | 65.5172 | 9 | 3 | 9 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | func_cds | het | 88.8889 | 88.8889 | 88.8889 | 59.0909 | 8 | 1 | 8 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I16_PLUS | func_cds | homalt | 66.6667 | 50.0000 | 100.0000 | 85.7143 | 1 | 1 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I1_5 | func_cds | * | 94.1828 | 94.4444 | 93.9227 | 43.4375 | 170 | 10 | 170 | 11 | 7 | 63.6364 | |
| ghariani-varprowl | INDEL | I1_5 | func_cds | het | 90.3226 | 94.9153 | 86.1538 | 58.3333 | 56 | 3 | 56 | 9 | 6 | 66.6667 | |
| ghariani-varprowl | INDEL | I1_5 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I1_5 | func_cds | homalt | 97.0213 | 95.7983 | 98.2759 | 29.2683 | 114 | 5 | 114 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D6_15 | func_cds | * | 86.7470 | 83.7209 | 90.0000 | 58.3333 | 36 | 7 | 36 | 4 | 4 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | func_cds | het | 91.8033 | 96.5517 | 87.5000 | 57.8947 | 28 | 1 | 28 | 4 | 4 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D6_15 | func_cds | homalt | 80.0000 | 66.6667 | 100.0000 | 60.0000 | 8 | 4 | 8 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | func_cds | * | 86.3919 | 81.7610 | 91.5789 | 51.7766 | 130 | 29 | 174 | 16 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D1_5 | func_cds | het | 81.7516 | 78.8235 | 84.9057 | 60.5948 | 67 | 18 | 90 | 16 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D1_5 | func_cds | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D1_5 | func_cds | homalt | 91.9708 | 85.1351 | 100.0000 | 31.1475 | 63 | 11 | 84 | 0 | 0 | ||