PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 850 851 852 853 854 855 856 857 858 ... 1720 1721 » 42651-42700 / 86044 show all
jmaeng-gatk	INDEL	C6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	C16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	C16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	C16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	C16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.1711	98.8017	99.5433	59.8357	19624	238	19617	90	58	64.4444
jmaeng-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	het	99.4180	99.2798	99.5566	63.6361	11028	80	11002	49	18	36.7347
jmaeng-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	96.9531	94.2953	99.7651	38.9579	2529	153	2548	6	6	100.0000
jmaeng-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.6714	99.9177	99.4264	57.8940	6067	5	6067	35	34	97.1429
jli-custom	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.2134	99.9065	98.5299	39.2599	18166	17	18163	271	4	1.4760
jli-custom	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	het	98.7888	99.9038	97.6985	41.2693	11422	11	11419	269	2	0.7435
jli-custom	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	100.0000	100.0000	100.0000	64.2857	5	0	5	0	0
jli-custom	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9407	99.9110	99.9703	35.3939	6739	6	6739	2	2	100.0000
jli-custom	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	*	98.6800	99.8524	97.5347	38.6336	7441	11	7438	188	3	1.5957
jli-custom	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	het	97.9793	99.8507	96.1768	39.7598	4682	7	4679	186	1	0.5376
jli-custom	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	100.0000	100.0000	100.0000	64.2857	5	0	5	0	0
jli-custom	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.8912	99.8550	99.9274	36.4538	2754	4	2754	2	2	100.0000
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*	98.5356	98.2273	98.8458	72.2319	942	17	942	11	9	81.8182
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het	98.8483	99.0025	98.6945	81.4707	397	4	378	5	4	80.0000
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	97.5490	96.0366	99.1098	37.5926	315	13	334	3	3	100.0000
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.3521	100.0000	98.7124	71.7576	230	0	230	3	2	66.6667
jli-custom	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.5868	99.9441	99.2321	39.7088	10726	6	10726	83	1	1.2048
jli-custom	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	99.3587	99.9407	98.7835	42.3002	6740	4	6740	83	1	1.2048
jli-custom	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	100.0000	100.0000	100.0000	83.3333	1	0	1	0	0
jli-custom	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9749	99.9498	100.0000	34.6400	3985	2	3985	0	0
jlack-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.0126	98.9729	99.0524	59.2954	19658	204	19651	188	96	51.0638
jlack-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	het	98.9876	99.1538	98.8219	62.9494	11014	94	10989	131	41	31.2977
jlack-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.0087	96.3087	99.7699	41.5864	2583	99	2601	6	6	100.0000
jlack-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.4911	99.8188	99.1656	57.1479	6061	11	6061	51	49	96.0784
jlack-gatk	INDEL	C6_15	lowcmp_SimpleRepeat_quadTR_11to50	*		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C6_15	lowcmp_SimpleRepeat_quadTR_11to50	het		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*	98.1723	98.0188	98.3264	71.8409	940	19	940	16	9	56.2500
jlack-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het	97.5761	98.2544	96.9072	81.0824	394	7	376	12	5	41.6667
jlack-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	97.7060	96.3415	99.1098	37.3606	316	12	334	3	3	100.0000
jlack-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7831	100.0000	99.5671	71.3400	230	0	230	1	1	100.0000
jlack-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.4066	99.4274	99.3858	50.7439	11807	68	11812	73	23	31.5068
jlack-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.3167	99.5384	99.0960	53.8093	6685	31	6687	61	11	18.0328
jlack-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.7481	97.7227	99.7952	31.6698	1459	34	1462	3	3	100.0000
jlack-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.8365	99.9182	99.7549	50.2169	3663	3	3663	9	9	100.0000
jlack-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	98.6004	98.3998	98.8017	51.3514	3628	59	3628	44	28	63.6364
jlack-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	98.6126	98.8520	98.3745	60.9084	1636	19	1634	27	12	44.4444
jlack-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.2010	96.9543	99.4801	27.1465	1146	36	1148	6	6	100.0000
jlack-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.1213	99.5294	98.7165	50.0292	846	4	846	11	10	90.9091
jlack-gatk	INDEL	C1_5	lowcmp_SimpleRepeat_quadTR_11to50	*		0.0000	0.0000	0.0000	0	1	0	0	0
jlack-gatk	INDEL	C1_5	lowcmp_SimpleRepeat_quadTR_11to50	het		0.0000	0.0000	0.0000	0	1	0	0	0
jlack-gatk	INDEL	C1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm3	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	*	99.4812	99.0741	99.8917	37.3686	7383	69	7380	8	2	25.0000

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge