PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42501-42550 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.4514 | 96.5009 | 98.4209 | 44.2767 | 6481 | 235 | 7230 | 116 | 68 | 58.6207 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 60.8995 | 44.8091 | 95.0199 | 66.3989 | 669 | 824 | 954 | 50 | 47 | 94.0000 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 92.1748 | 98.3088 | 86.7613 | 48.1654 | 3604 | 62 | 4155 | 634 | 622 | 98.1073 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 77.6919 | 72.9319 | 83.1165 | 45.6084 | 2689 | 998 | 2939 | 597 | 575 | 96.3149 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 90.6327 | 87.6737 | 93.7984 | 45.3197 | 1451 | 204 | 1452 | 96 | 90 | 93.7500 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 55.5323 | 39.1709 | 95.3662 | 55.2807 | 463 | 719 | 638 | 31 | 30 | 96.7742 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 75.4613 | 91.1765 | 64.3669 | 39.3284 | 775 | 75 | 849 | 470 | 455 | 96.8085 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 82.4818 | 94.3177 | 0 | 1 | 113 | 24 | 14 | 58.3333 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 91.9355 | 93.4322 | 0 | 1 | 57 | 5 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 70.0000 | 94.7984 | 0 | 0 | 28 | 12 | 10 | 83.3333 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 80.0000 | 94.9857 | 0 | 0 | 28 | 7 | 4 | 57.1429 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 60.5212 | 53.0761 | 70.3956 | 56.0815 | 509 | 450 | 516 | 217 | 206 | 94.9309 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 70.1872 | 69.5761 | 70.8092 | 55.2972 | 279 | 122 | 245 | 101 | 98 | 97.0297 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 46.1571 | 30.4878 | 94.9640 | 69.3833 | 100 | 228 | 132 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 56.2841 | 56.5217 | 56.0484 | 43.7642 | 130 | 100 | 139 | 109 | 101 | 92.6606 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.6815 | 97.8712 | 99.5052 | 68.1063 | 3816 | 83 | 3821 | 19 | 14 | 73.6842 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.2934 | 99.0605 | 99.5275 | 75.3924 | 1687 | 16 | 1685 | 8 | 3 | 37.5000 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 96.9476 | 94.0760 | 100.0000 | 38.5189 | 1064 | 67 | 1071 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.4862 | 100.0000 | 98.9777 | 68.5196 | 1065 | 0 | 1065 | 11 | 11 | 100.0000 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.5441 | 97.3505 | 99.7673 | 61.8300 | 1286 | 35 | 1286 | 3 | 2 | 66.6667 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.2409 | 98.7069 | 99.7807 | 72.5962 | 458 | 6 | 455 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.6856 | 95.4758 | 100.0000 | 40.5222 | 612 | 29 | 615 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.5392 | 100.0000 | 99.0826 | 67.8940 | 216 | 0 | 216 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.9112 | 96.6495 | 99.2063 | 75.8157 | 375 | 13 | 375 | 3 | 2 | 66.6667 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.1963 | 97.6190 | 98.7805 | 79.4486 | 164 | 4 | 162 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.3607 | 94.8571 | 100.0000 | 65.1452 | 166 | 9 | 168 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.9011 | 100.0000 | 97.8261 | 83.7456 | 45 | 0 | 45 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.9022 | 98.6444 | 99.1614 | 72.9208 | 946 | 13 | 946 | 8 | 6 | 75.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.2375 | 99.0025 | 99.4737 | 82.2678 | 397 | 4 | 378 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.1793 | 97.2561 | 99.1202 | 37.6600 | 319 | 9 | 338 | 3 | 3 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.3521 | 100.0000 | 98.7124 | 72.0288 | 230 | 0 | 230 | 3 | 2 | 66.6667 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.6415 | 99.4695 | 99.8142 | 51.5034 | 11812 | 63 | 11817 | 22 | 15 | 68.1818 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.7468 | 99.7171 | 99.7766 | 54.5091 | 6697 | 19 | 6699 | 15 | 8 | 53.3333 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.4732 | 97.1869 | 99.7941 | 31.3060 | 1451 | 42 | 1454 | 3 | 3 | 100.0000 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9182 | 99.9454 | 99.8909 | 51.3011 | 3664 | 2 | 3664 | 4 | 4 | 100.0000 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.2927 | 98.9965 | 99.5907 | 51.8966 | 3650 | 37 | 3650 | 15 | 12 | 80.0000 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.4854 | 99.3353 | 99.6359 | 61.3327 | 1644 | 11 | 1642 | 6 | 3 | 50.0000 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.6785 | 97.8849 | 99.4850 | 27.6398 | 1157 | 25 | 1159 | 6 | 6 | 100.0000 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7650 | 99.8824 | 99.6479 | 51.2307 | 849 | 1 | 849 | 3 | 3 | 100.0000 | |
| ckim-vqsr | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.4758 | 99.1531 | 99.8007 | 37.5709 | 18029 | 154 | 18026 | 36 | 2 | 5.5556 | |
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.1734 | 98.6530 | 99.6994 | 37.5173 | 11279 | 154 | 11276 | 34 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.5882 | 5 | 0 | 5 | 0 | 0 | ||