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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 846 847 848 849 850 851 852 853 854 ... 1720 1721 » 42451-42500 / 86044 show all
ckim-isaac	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	94.3325	89.8592	99.2746	57.8234	957	108	958	7	4	57.1429
dgrover-gatk	INDEL	C6_15	lowcmp_SimpleRepeat_quadTR_11to50	*		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C6_15	lowcmp_SimpleRepeat_quadTR_11to50	het		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*	99.0605	98.9572	99.1641	72.4921	949	10	949	8	6	75.0000
dgrover-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het	99.3640	99.2519	99.4764	81.8355	398	3	380	2	1	50.0000
dgrover-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.4903	97.8659	99.1228	38.1555	321	7	339	3	3	100.0000
dgrover-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.3521	100.0000	98.7124	71.6889	230	0	230	3	2	66.6667
dgrover-gatk	INDEL	C16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C1_5	lowcmp_SimpleRepeat_quadTR_11to50	*		0.0000	0.0000	0.0000	0	1	0	0	0
dgrover-gatk	INDEL	C1_5	lowcmp_SimpleRepeat_quadTR_11to50	het		0.0000	0.0000	0.0000	0	1	0	0	0
dgrover-gatk	INDEL	C1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.0811	99.3345	98.8289	41.8039	18062	121	18059	214	2	0.9346
ckim-vqsr	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	het	98.8227	99.5014	98.1531	44.9941	11376	57	11373	214	2	0.9346
ckim-vqsr	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	100.0000	100.0000	100.0000	66.6667	5	0	5	0	0
ckim-vqsr	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.5233	99.0511	100.0000	35.2554	6681	64	6681	0	0
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	*	98.6992	99.3022	98.1034	41.3093	7400	52	7397	143	1	0.6993
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	het	98.2513	99.5095	97.0246	43.7566	4666	23	4663	143	1	0.6993
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	100.0000	100.0000	100.0000	66.6667	5	0	5	0	0
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.4715	98.9485	100.0000	36.3424	2729	29	2729	0	0
dgrover-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.5315	99.4915	99.5716	59.7014	19761	101	19754	85	47	55.2941
dgrover-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	het	99.5450	99.5769	99.5131	63.1488	11061	47	11036	54	17	31.4815
dgrover-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.9101	98.0611	99.7739	42.7400	2630	52	2648	6	6	100.0000
dgrover-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7781	99.9671	99.5898	57.9684	6070	2	6070	25	24	96.0000
dgrover-gatk	INDEL	C16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.3478	99.3571	99.3386	42.1628	10663	69	10663	71	1	1.4085
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	99.2237	99.4958	98.9530	45.8387	6710	34	6710	71	1	1.4085
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	100.0000	100.0000	100.0000	85.7143	1	0	1	0	0
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.5591	99.1221	100.0000	34.4828	3952	35	3952	0	0
eyeh-varpipe	INDEL	C6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	0.0000	0.0000	63.0435	92.8903	0	0	29	17	8	47.0588
eyeh-varpipe	INDEL	C6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	0.0000	0.0000	72.7273	94.2105	0	0	8	3	1	33.3333
eyeh-varpipe	INDEL	C6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	0.0000	0.0000	78.9474	92.6357	0	0	15	4	2	50.0000
eyeh-varpipe	INDEL	C6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	0.0000	0.0000	37.5000	91.9598	0	0	6	10	5	50.0000
eyeh-varpipe	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*	36.8670	24.7423	72.2944	43.7956	96	292	334	128	127	99.2188
eyeh-varpipe	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het	45.8194	33.3333	73.2620	48.9071	56	112	137	50	50	100.0000
eyeh-varpipe	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	19.3536	10.8571	89.0110	49.7238	19	156	81	10	10	100.0000
eyeh-varpipe	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt	53.6328	46.6667	63.0435	33.0909	21	24	116	68	67	98.5294
eyeh-varpipe	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	84.5812	78.6612	91.4649	48.1133	3067	832	10502	980	908	92.6531
eyeh-varpipe	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	94.6758	93.5408	95.8387	47.4428	1593	110	5988	260	204	78.4615
eyeh-varpipe	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	60.1378	44.2087	94.0120	60.5667	500	631	942	60	57	95.0000
eyeh-varpipe	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	87.7886	91.4554	84.4045	45.0390	974	91	3572	660	647	98.0303
eyeh-varpipe	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	63.9710	53.3687	79.8301	38.1774	705	616	2632	665	660	99.2481
eyeh-varpipe	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	79.6904	73.7069	86.7312	40.6237	342	122	1255	192	190	98.9583
eyeh-varpipe	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	48.0410	32.1373	95.1060	47.1096	206	435	583	30	30	100.0000
eyeh-varpipe	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	68.1726	72.6852	64.1876	28.7853	157	59	794	443	440	99.3228
eyeh-varpipe	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	92.2052	90.5600	93.9113	48.2920	10754	1121	12339	800	737	92.1250

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